RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 GZMKP49863 264 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 PPOXP50336 477 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 ANXA11P50995 505 aaKnown RBP5.81□□□□□ -1.48
VPS53-213ENST00000572334 CRISP3P54108 245 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 CLDN17P56750 224 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 ARF1P84077 181 aaKnown RBP5.81□□□□□ -1.48
VPS53-213ENST00000572334 LRRC74AQ0VAA2 488 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 KRR1Q13601 381 aaKnown RBP5.81□□□□□ -1.48
VPS53-213ENST00000572334 RIN1Q13671 783 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 GNA13Q14344 377 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 RGNQ15493 299 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 MS4A18Q3C1V0 323 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 C16orf87Q6PH81 154 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 SLC2A7Q6PXP3 512 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 MSANTD1Q6ZTZ1 278 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 FUNDC1Q8IVP5 155 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 LSMEM1Q8N8F7 131 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 NUP37Q8NFH4 326 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 GIPC3Q8TF64 312 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 TAAR8Q969N4 342 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 NRBF2Q96F24 287 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 SLC41A3Q96GZ6 507 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 C1orf159Q96HA4 380 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 OR2M2Q96R28 347 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 VRK1Q99986 396 aaPredicted RBP5.81□□□□□ -1.48
VPS53-213ENST00000572334 C19orf24Q9BVV8 132 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 SHARPINQ9H0F6 387 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 IKZF5Q9H5V7 419 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 ZNF442Q9H7R0 627 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 CHODLQ9H9P2 273 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 GPR35Q9HC97 309 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 S100A14Q9HCY8 104 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 A4GALTQ9NPC4 353 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 B3GNT2Q9NY97 397 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 ZNF224Q9NZL3 707 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 CALML5Q9NZT1 146 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 LPAR3Q9UBY5 353 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 RCE1Q9Y256 329 aa5.81□□□□□ -1.48
VPS53-213ENST00000572334 TANC2Q9HCD6 1990 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 TRBV5-3A0A0A0MS03 114 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 LOC100289279A0A1B0GTE1 492 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 LOC102725191A0A1B0GVB3 256 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 A0A1B0GWA3 101 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 OR6C65A6NJZ3 312 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 TRPC5OSA6NMA1 111 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 B2RBV5 119 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 LRRN3E7EW58 273 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 LYNX1G3V0Z9 82 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 hCG_2039718K7EN88 272 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 M0QX08 132 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 M0R082 166 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 CLIC1O00299 241 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 SLC22A1O15245 554 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 SERPINB7O75635 380 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 SEC14L2O76054 403 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 CRYAAP02489 173 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 BGLAPP02818 100 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 CCDC159P0C7I6 412 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 LYNX1P0DP58 116 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 ARAFP10398 606 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 BMP4P12644 408 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 APEHP13798 732 aaKnown RBP5.8□□□□□ -1.48
VPS53-213ENST00000572334 SRD5A1P18405 259 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 PRDX6P30041 224 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 GRPRP30550 384 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 MRPL19P49406 292 aaKnown RBP5.8□□□□□ -1.48
VPS53-213ENST00000572334 IDH3GP51553 393 aaPredicted RBP5.8□□□□□ -1.48
VPS53-213ENST00000572334 BCAP31P51572 246 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 POLR2JP52435 117 aaKnown RBP5.8□□□□□ -1.48
VPS53-213ENST00000572334 UBE2NP61088 152 aaKnown RBP5.8□□□□□ -1.48
VPS53-213ENST00000572334 COPZ1P61923 177 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 SNRPD2P62316 118 aaKnown RBP5.8□□□□□ -1.48
VPS53-213ENST00000572334 LARS2Q15031 903 aaKnown RBP5.8□□□□□ -1.48
VPS53-213ENST00000572334 TRIP10Q15642 601 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 CR1LQ2VPA4 569 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 CEACAM16Q2WEN9 425 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 ZNF311Q5JNZ3 666 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 PAGE3Q5JUK9 113 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 LRIF1Q5T3J3 769 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 FAM166AQ6J272 317 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 VHLLQ6RSH7 139 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 KLHL24Q6TFL4 600 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 EPGNQ6UW88 154 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 ZNF627Q7L945 461 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 SLC46A3Q7Z3Q1 461 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 ABHD12BQ7Z5M8 362 aaPredicted RBP5.8□□□□□ -1.48
VPS53-213ENST00000572334 ARPINQ7Z6K5 226 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 MDP1Q86V88 176 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 SLC15A3Q8IY34 581 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 C20orf196Q8IYI0 205 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 CDK20Q8IZL9 346 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 SVOPLQ8N434 492 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 RBM15BQ8NDT2 890 aaKnown RBP5.8□□□□□ -1.48
VPS53-213ENST00000572334 ANKK1Q8NFD2 765 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 OR4F15Q8NGB8 312 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 ZNF417Q8TAU3 575 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 S100ZQ8WXG8 99 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 SLC25A36Q96CQ1 311 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 ITCHQ96J02 903 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 TXNDC15Q96J42 360 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms