RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 OR4F3Q6IEY1 312 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 Q6YL49 198 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 ZNF627Q7L945 461 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 LCA5Q86VQ0 697 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 RNF130Q86XS8 419 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 C20orf196Q8IYI0 205 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 NATD1Q8N6N6 113 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 MFSD8Q8NHS3 518 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 ZNF519Q8TB69 540 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 GEMIN6Q8WXD5 167 aaKnown RBP9.88□□□□□ -0.83
CLK3-222ENST00000568232 C11orf40Q8WZ69 217 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 UPRTQ96BW1 309 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 DIRC2Q96SL1 478 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 SLC30A2Q9BRI3 323 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 SLC38A1Q9H2H9 487 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 RASSF4Q9H2L5 321 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 PRDM13Q9H4Q3 707 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 PATZ1Q9HBE1 687 aaKnown RBP9.88□□□□□ -0.83
CLK3-222ENST00000568232 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.88□□□□□ -0.83
CLK3-222ENST00000568232 NPTNQ9Y639 398 aa9.88□□□□□ -0.83
CLK3-222ENST00000568232 BIRC6Q9NR09 4857 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 TM9SF1O15321 606 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 LYPLA1O75608 230 aaPredicted RBP9.87□□□□□ -0.83
CLK3-222ENST00000568232 UBL3O95164 117 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 AHSA1O95433 338 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 PRG2P13727 222 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 UQCRBP14927 111 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 IL7RP16871 459 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 DRD4P21917 467 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 CBLP22681 906 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 MAPK1P28482 360 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 DNAJB13P59910 316 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 HPCAP84074 193 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 EGR4Q05215 589 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 UGT3A2Q3SY77 523 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 IL23RQ5VWK5 629 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 WBP2NLQ6ICG8 309 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 RNF165Q6ZSG1 346 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 KLHL36Q8N4N3 616 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 SLC30A7Q8NEW0 376 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 OR4A15Q8NGL6 344 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 TWIST2Q8WVJ9 160 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 NEURL3Q96EH8 262 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 FOXB1Q99853 325 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 OCSTAMPQ9BR26 566 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 DPY30Q9C005 99 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 DENND2DQ9H6A0 471 aaPredicted RBP9.87□□□□□ -0.83
CLK3-222ENST00000568232 KLHL21Q9UJP4 597 aa9.87□□□□□ -0.83
CLK3-222ENST00000568232 EXOC1LA0A1B0GW35 172 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 C5orf63A6NC05 138 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 ZSCAN5BA6NJL1 495 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 A8MXK9 166 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 M0R082 166 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 HMGN4O00479 90 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 ERLIN1O75477 346 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 CPSF4O95639 269 aaKnown RBP9.86□□□□□ -0.83
CLK3-222ENST00000568232 CHEK2O96017 543 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 HPRP00739 348 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 IGHV3-13P01766 116 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 MT-ND5P03915 603 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 PROCP04070 461 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 PRPS1L1P21108 318 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 RPS4Y1P22090 263 aaKnown RBP9.86□□□□□ -0.83
CLK3-222ENST00000568232 GTF2E2P29084 291 aaKnown RBP9.86□□□□□ -0.83
CLK3-222ENST00000568232 MMP15P51511 669 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 UCP2P55851 309 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 NAA20P61599 178 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 PAX2Q02962 417 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 SLC3A1Q07837 685 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 FAM209AQ5JX71 171 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 CCBE1Q6UXH8 406 aaPredicted RBP9.86□□□□□ -0.83
CLK3-222ENST00000568232 ANKRD46Q86W74 232 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 MIER2Q8N344 545 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 POU5F2Q8N7G0 328 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 ZNF417Q8TAU3 575 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 PNPT1Q8TCS8 783 aaKnown RBP9.86□□□□□ -0.83
CLK3-222ENST00000568232 STK35Q8TDR2 534 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 TXNDC15Q96J42 360 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 C3orf30Q96M34 536 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 ZNF587Q96SQ5 575 aaPredicted RBP9.86□□□□□ -0.83
CLK3-222ENST00000568232 CDH20Q9HBT6 801 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 OR5V1Q9UGF6 321 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 TRIM33Q9UPN9 1127 aa9.86□□□□□ -0.83
CLK3-222ENST00000568232 A0A087WUV0 522 aaPredicted RBP9.85□□□□□ -0.83
CLK3-222ENST00000568232 CDHR4A6H8M9 788 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 F5H0A9 414 aaPredicted RBP9.85□□□□□ -0.83
CLK3-222ENST00000568232 MS4A18H0YCH9 400 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 PIP5K1CO60331 668 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 MELTFP08582 738 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 MYZAPP0CAP1 466 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 PPIAL4GP0DN37 164 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 MPV17P39210 176 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 COPZ1P61923 177 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 PMS2P3Q13401 168 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 MOGQ16653 247 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 MS4A18Q3C1V0 323 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 ESCO2Q56NI9 601 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 C6orf136Q5SQH8 315 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 SPATA46Q5T0L3 261 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 RUSC1-AS1Q66K80 236 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms