RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 MSMPQ1L6U9 139 aa13.86□□□□□ -0.19
CLN3-229ENST00000567963 TRMT5Q32P41 509 aaKnown RBP13.86□□□□□ -0.19
CLN3-229ENST00000567963 TTC33Q6PID6 262 aaPredicted RBP13.86□□□□□ -0.19
CLN3-229ENST00000567963 PIWIL3Q7Z3Z3 882 aaKnown RBP13.86□□□□□ -0.19
CLN3-229ENST00000567963 RBM45Q8IUH3 476 aaKnown RBP13.86□□□□□ -0.19
CLN3-229ENST00000567963 OR4D11Q8NGI4 311 aa13.86□□□□□ -0.19
CLN3-229ENST00000567963 OR6X1Q8NH79 312 aa13.86□□□□□ -0.19
CLN3-229ENST00000567963 ADAMTS16Q8TE57 1224 aa13.86□□□□□ -0.19
CLN3-229ENST00000567963 UBASH3BQ8TF42 649 aa13.86□□□□□ -0.19
CLN3-229ENST00000567963 TSPEARQ8WU66 669 aa13.86□□□□□ -0.19
CLN3-229ENST00000567963 TMEM54Q969K7 222 aa13.86□□□□□ -0.19
CLN3-229ENST00000567963 MRPL37Q9BZE1 423 aaKnown RBP13.86□□□□□ -0.19
CLN3-229ENST00000567963 SYNGR3O43761 229 aa13.85□□□□□ -0.19
CLN3-229ENST00000567963 LYPD3O95274 346 aa13.85□□□□□ -0.19
CLN3-229ENST00000567963 CH25HO95992 272 aa13.85□□□□□ -0.19
CLN3-229ENST00000567963 GLRXP35754 106 aa13.85□□□□□ -0.19
CLN3-229ENST00000567963 CHN2P52757 468 aa13.85□□□□□ -0.19
CLN3-229ENST00000567963 SLC35D2Q76EJ3 337 aa13.85□□□□□ -0.19
CLN3-229ENST00000567963 SLC30A8Q8IWU4 369 aa13.85□□□□□ -0.19
CLN3-229ENST00000567963 HPS1Q92902 700 aa13.85□□□□□ -0.19
CLN3-229ENST00000567963 MAGEB18Q96M61 343 aa13.85□□□□□ -0.19
CLN3-229ENST00000567963 TPK1Q9H3S4 243 aa13.85□□□□□ -0.19
CLN3-229ENST00000567963 NANSQ9NR45 359 aa13.85□□□□□ -0.19
CLN3-229ENST00000567963 GLTPQ9NZD2 209 aa13.85□□□□□ -0.19
CLN3-229ENST00000567963 SLC7A7Q9UM01 511 aa13.85□□□□□ -0.19
CLN3-229ENST00000567963 TRIM33Q9UPN9 1127 aa13.85□□□□□ -0.19
CLN3-229ENST00000567963 UBL3O95164 117 aa13.84□□□□□ -0.19
CLN3-229ENST00000567963 RAB36O95755 333 aa13.84□□□□□ -0.19
CLN3-229ENST00000567963 HNF1AP20823 631 aa13.84□□□□□ -0.19
CLN3-229ENST00000567963 CD247P20963 164 aa13.84□□□□□ -0.19
CLN3-229ENST00000567963 IL2RGP31785 369 aa13.84□□□□□ -0.19
CLN3-229ENST00000567963 NFYCQ13952 458 aa13.84□□□□□ -0.19
CLN3-229ENST00000567963 FXNQ16595 210 aa13.84□□□□□ -0.19
CLN3-229ENST00000567963 KRTAP24-1Q3LI83 254 aa13.84□□□□□ -0.19
CLN3-229ENST00000567963 PATL1Q86TB9 770 aaKnown RBP13.84□□□□□ -0.19
CLN3-229ENST00000567963 TSPYL5Q86VY4 417 aaPredicted RBP13.84□□□□□ -0.19
CLN3-229ENST00000567963 SKA3Q8IX90 412 aa13.84□□□□□ -0.19
CLN3-229ENST00000567963 LRRC17Q8N6Y2 441 aa13.84□□□□□ -0.19
CLN3-229ENST00000567963 OR10A6Q8NH74 314 aa13.84□□□□□ -0.19
CLN3-229ENST00000567963 VANGL1Q8TAA9 524 aaPredicted RBP13.84□□□□□ -0.19
CLN3-229ENST00000567963 ZNF426Q9BUY5 554 aa13.84□□□□□ -0.19
CLN3-229ENST00000567963 PCDHAC1Q9H158 963 aa13.84□□□□□ -0.19
CLN3-229ENST00000567963 MS4A5Q9H3V2 200 aa13.84□□□□□ -0.19
CLN3-229ENST00000567963 REV1Q9UBZ9 1251 aa13.84□□□□□ -0.19
CLN3-229ENST00000567963 FBXL3Q9UKT7 428 aa13.84□□□□□ -0.19
CLN3-229ENST00000567963 TRAPPC13A5PLN9 417 aa13.83□□□□□ -0.2
CLN3-229ENST00000567963 LYNX1G3V0Z9 82 aa13.83□□□□□ -0.2
CLN3-229ENST00000567963 RNF13O43567 381 aa13.83□□□□□ -0.2
CLN3-229ENST00000567963 SERPINA5P05154 406 aa13.83□□□□□ -0.2
CLN3-229ENST00000567963 ASAH2BP0C7U1 165 aa13.83□□□□□ -0.2
CLN3-229ENST00000567963 PATE4P0C8F1 98 aa13.83□□□□□ -0.2
CLN3-229ENST00000567963 LYNX1P0DP58 116 aa13.83□□□□□ -0.2
CLN3-229ENST00000567963 PCGF2P35227 344 aa13.83□□□□□ -0.2
CLN3-229ENST00000567963 GZMMP51124 257 aa13.83□□□□□ -0.2
CLN3-229ENST00000567963 GALK2Q01415 458 aa13.83□□□□□ -0.2
CLN3-229ENST00000567963 RAB39AQ14964 217 aa13.83□□□□□ -0.2
CLN3-229ENST00000567963 CR1LQ2VPA4 569 aa13.83□□□□□ -0.2
CLN3-229ENST00000567963 GKAP1Q5VSY0 366 aaPredicted RBP13.83□□□□□ -0.2
CLN3-229ENST00000567963 LRFN4Q6PJG9 635 aa13.83□□□□□ -0.2
CLN3-229ENST00000567963 ZNF584Q8IVC4 421 aa13.83□□□□□ -0.2
CLN3-229ENST00000567963 SLC22A24Q8N4F4 322 aa13.83□□□□□ -0.2
CLN3-229ENST00000567963 FGFBP3Q8TAT2 258 aa13.83□□□□□ -0.2
CLN3-229ENST00000567963 SLC26A7Q8TE54 656 aa13.83□□□□□ -0.2
CLN3-229ENST00000567963 ZNF566Q969W8 418 aa13.83□□□□□ -0.2
CLN3-229ENST00000567963 TAMM41Q96BW9 452 aa13.83□□□□□ -0.2
CLN3-229ENST00000567963 SLC25A44Q96H78 314 aaPredicted RBP13.83□□□□□ -0.2
CLN3-229ENST00000567963 MPP4Q96JB8 637 aa13.83□□□□□ -0.2
CLN3-229ENST00000567963 SNX18Q96RF0 628 aa13.83□□□□□ -0.2
CLN3-229ENST00000567963 SLC19A3Q9BZV2 496 aa13.83□□□□□ -0.2
CLN3-229ENST00000567963 ZNF229Q9UJW7 825 aa13.83□□□□□ -0.2
CLN3-229ENST00000567963 HMGB1P1B2RPK0 211 aaPredicted RBP13.82□□□□□ -0.2
CLN3-229ENST00000567963 M0R233 179 aa13.82□□□□□ -0.2
CLN3-229ENST00000567963 KPNA4O00629 521 aaPredicted RBP13.82□□□□□ -0.2
CLN3-229ENST00000567963 OR8G3PP0DMU2 310 aa13.82□□□□□ -0.2
CLN3-229ENST00000567963 APEX1P27695 318 aaKnown RBP13.82□□□□□ -0.2
CLN3-229ENST00000567963 CRYBA2P53672 197 aa13.82□□□□□ -0.2
CLN3-229ENST00000567963 RPS23P62266 143 aaKnown RBP13.82□□□□□ -0.2
CLN3-229ENST00000567963 TRIP10Q15642 601 aa13.82□□□□□ -0.2
CLN3-229ENST00000567963 INTS11Q5TA45 600 aaKnown RBP13.82□□□□□ -0.2
CLN3-229ENST00000567963 LRP11Q86VZ4 500 aa13.82□□□□□ -0.2
CLN3-229ENST00000567963 LINC01356Q8N9X3 169 aa13.82□□□□□ -0.2
CLN3-229ENST00000567963 RASSF5Q8WWW0 418 aa13.82□□□□□ -0.2
CLN3-229ENST00000567963 SYT3Q9BQG1 590 aa13.82□□□□□ -0.2
CLN3-229ENST00000567963 PRSS27Q9BQR3 290 aa13.82□□□□□ -0.2
CLN3-229ENST00000567963 NPHS2Q9NP85 383 aa13.82□□□□□ -0.2
CLN3-229ENST00000567963 ARGLU1Q9NWB6 273 aaPredicted RBP13.82□□□□□ -0.2
CLN3-229ENST00000567963 DHHO43323 396 aa13.81□□□□□ -0.2
CLN3-229ENST00000567963 HIST1H2ABP04908 130 aa13.81□□□□□ -0.2
CLN3-229ENST00000567963 PGA4P0DJD7 388 aa13.81□□□□□ -0.2
CLN3-229ENST00000567963 PGA3P0DJD8 388 aa13.81□□□□□ -0.2
CLN3-229ENST00000567963 TCN1P20061 433 aaPredicted RBP13.81□□□□□ -0.2
CLN3-229ENST00000567963 ALDH3B1P43353 468 aa13.81□□□□□ -0.2
CLN3-229ENST00000567963 SEC24CP53992 1094 aa13.81□□□□□ -0.2
CLN3-229ENST00000567963 MELKQ14680 651 aa13.81□□□□□ -0.2
CLN3-229ENST00000567963 VMACQ2NL98 169 aa13.81□□□□□ -0.2
CLN3-229ENST00000567963 ELFN2Q5R3F8 820 aa13.81□□□□□ -0.2
CLN3-229ENST00000567963 METTL21CQ5VZV1 264 aa13.81□□□□□ -0.2
CLN3-229ENST00000567963 NANOGP8Q6NSW7 305 aa13.81□□□□□ -0.2
CLN3-229ENST00000567963 CCDC80Q76M96 950 aa13.81□□□□□ -0.2
CLN3-229ENST00000567963 HIST3H2AQ7L7L0 130 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms