RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 PATL1Q86TB9 770 aaKnown RBP16.14■□□□□ 0.17
CLN3-218ENST00000565688 OR6T1Q8NGN1 323 aa16.14■□□□□ 0.17
CLN3-218ENST00000565688 TSPEARQ8WU66 669 aa16.14■□□□□ 0.17
CLN3-218ENST00000565688 MRPL37Q9BZE1 423 aaKnown RBP16.14■□□□□ 0.17
CLN3-218ENST00000565688 SLC19A3Q9BZV2 496 aa16.14■□□□□ 0.17
CLN3-218ENST00000565688 INTS9Q9NV88 658 aaKnown RBP16.14■□□□□ 0.17
CLN3-218ENST00000565688 ZNF224Q9NZL3 707 aa16.14■□□□□ 0.17
CLN3-218ENST00000565688 TRAPPC13A5PLN9 417 aa16.13■□□□□ 0.17
CLN3-218ENST00000565688 CPSF4LA6NMK7 179 aaKnown RBP16.13■□□□□ 0.17
CLN3-218ENST00000565688 C11orf98E9PRG8 122 aa16.13■□□□□ 0.17
CLN3-218ENST00000565688 LILRA1O75019 489 aa16.13■□□□□ 0.17
CLN3-218ENST00000565688 OPN1SWP03999 348 aa16.13■□□□□ 0.17
CLN3-218ENST00000565688 IGFBP1P08833 259 aaPredicted RBP16.13■□□□□ 0.17
CLN3-218ENST00000565688 APEX1P27695 318 aaKnown RBP16.13■□□□□ 0.17
CLN3-218ENST00000565688 MTPNP58546 118 aa16.13■□□□□ 0.17
CLN3-218ENST00000565688 ZP4Q12836 540 aa16.13■□□□□ 0.17
CLN3-218ENST00000565688 NPTX1Q15818 432 aa16.13■□□□□ 0.17
CLN3-218ENST00000565688 ZNF74Q16587 644 aa16.13■□□□□ 0.17
CLN3-218ENST00000565688 KRTAP24-1Q3LI83 254 aa16.13■□□□□ 0.17
CLN3-218ENST00000565688 INTS11Q5TA45 600 aaKnown RBP16.13■□□□□ 0.17
CLN3-218ENST00000565688 REP15Q6BDI9 236 aa16.13■□□□□ 0.17
CLN3-218ENST00000565688 SLC35D2Q76EJ3 337 aa16.13■□□□□ 0.17
CLN3-218ENST00000565688 WDFY1Q8IWB7 410 aa16.13■□□□□ 0.17
CLN3-218ENST00000565688 LINC01356Q8N9X3 169 aa16.13■□□□□ 0.17
CLN3-218ENST00000565688 GPR32P1Q8NGA4 272 aa16.13■□□□□ 0.17
CLN3-218ENST00000565688 ADAMTS16Q8TE57 1224 aa16.13■□□□□ 0.17
CLN3-218ENST00000565688 TMEM54Q969K7 222 aa16.13■□□□□ 0.17
CLN3-218ENST00000565688 ZNF566Q969W8 418 aa16.13■□□□□ 0.17
CLN3-218ENST00000565688 MPP4Q96JB8 637 aa16.13■□□□□ 0.17
CLN3-218ENST00000565688 SOX7Q9BT81 388 aa16.13■□□□□ 0.17
CLN3-218ENST00000565688 KAT8Q9H7Z6 458 aaKnown RBP16.13■□□□□ 0.17
CLN3-218ENST00000565688 NANSQ9NR45 359 aa16.13■□□□□ 0.17
CLN3-218ENST00000565688 GLTPQ9NZD2 209 aa16.13■□□□□ 0.17
CLN3-218ENST00000565688 REV1Q9UBZ9 1251 aa16.13■□□□□ 0.17
CLN3-218ENST00000565688 ZNF229Q9UJW7 825 aa16.13■□□□□ 0.17
CLN3-218ENST00000565688 RNF13O43567 381 aa16.12■□□□□ 0.17
CLN3-218ENST00000565688 CH25HO95992 272 aa16.12■□□□□ 0.17
CLN3-218ENST00000565688 HIST1H2ABP04908 130 aa16.12■□□□□ 0.17
CLN3-218ENST00000565688 SERPINA5P05154 406 aa16.12■□□□□ 0.17
CLN3-218ENST00000565688 OR8G3PP0DMU2 310 aa16.12■□□□□ 0.17
CLN3-218ENST00000565688 FXNQ16595 210 aa16.12■□□□□ 0.17
CLN3-218ENST00000565688 CR1LQ2VPA4 569 aa16.12■□□□□ 0.17
CLN3-218ENST00000565688 TTMPQ5BVD1 217 aa16.12■□□□□ 0.17
CLN3-218ENST00000565688 HIST3H2AQ7L7L0 130 aa16.12■□□□□ 0.17
CLN3-218ENST00000565688 DPPA2Q7Z7J5 298 aa16.12■□□□□ 0.17
CLN3-218ENST00000565688 SLC26A7Q8TE54 656 aa16.12■□□□□ 0.17
CLN3-218ENST00000565688 RASSF5Q8WWW0 418 aa16.12■□□□□ 0.17
CLN3-218ENST00000565688 HIST1H2ACQ93077 130 aa16.12■□□□□ 0.17
CLN3-218ENST00000565688 SLC25A44Q96H78 314 aaPredicted RBP16.12■□□□□ 0.17
CLN3-218ENST00000565688 SNX18Q96RF0 628 aa16.12■□□□□ 0.17
CLN3-218ENST00000565688 PCDHAC1Q9H158 963 aa16.12■□□□□ 0.17
CLN3-218ENST00000565688 TPK1Q9H3S4 243 aa16.12■□□□□ 0.17
CLN3-218ENST00000565688 ZNF385DQ9H6B1 395 aa16.12■□□□□ 0.17
CLN3-218ENST00000565688 TAS2R5Q9NYW4 299 aa16.12■□□□□ 0.17
CLN3-218ENST00000565688 SLC7A8Q9UHI5 535 aa16.12■□□□□ 0.17
CLN3-218ENST00000565688 SLC7A7Q9UM01 511 aa16.12■□□□□ 0.17
CLN3-218ENST00000565688 LYPD3O95274 346 aa16.11■□□□□ 0.17
CLN3-218ENST00000565688 PCGF2P35227 344 aa16.11■□□□□ 0.17
CLN3-218ENST00000565688 NFYCQ13952 458 aa16.11■□□□□ 0.17
CLN3-218ENST00000565688 SELPLGQ14242 412 aa16.11■□□□□ 0.17
CLN3-218ENST00000565688 WDR88Q6ZMY6 472 aa16.11■□□□□ 0.17
CLN3-218ENST00000565688 RETREG3Q86VR2 466 aa16.11■□□□□ 0.17
CLN3-218ENST00000565688 SKA3Q8IX90 412 aa16.11■□□□□ 0.17
CLN3-218ENST00000565688 SLC22A24Q8N4F4 322 aa16.11■□□□□ 0.17
CLN3-218ENST00000565688 VANGL1Q8TAA9 524 aaPredicted RBP16.11■□□□□ 0.17
CLN3-218ENST00000565688 C1orf159Q96HA4 380 aa16.11■□□□□ 0.17
CLN3-218ENST00000565688 MAGEB18Q96M61 343 aa16.11■□□□□ 0.17
CLN3-218ENST00000565688 SIKE1Q9BRV8 207 aa16.11■□□□□ 0.17
CLN3-218ENST00000565688 ZNF426Q9BUY5 554 aa16.11■□□□□ 0.17
CLN3-218ENST00000565688 HMGB1P1B2RPK0 211 aaPredicted RBP16.1■□□□□ 0.17
CLN3-218ENST00000565688 FARS2O95363 451 aaKnown RBP16.1■□□□□ 0.17
CLN3-218ENST00000565688 THY1P04216 161 aa16.1■□□□□ 0.17
CLN3-218ENST00000565688 CD247P20963 164 aa16.1■□□□□ 0.17
CLN3-218ENST00000565688 PCMT1P22061 227 aa16.1■□□□□ 0.17
CLN3-218ENST00000565688 IL2RGP31785 369 aa16.1■□□□□ 0.17
CLN3-218ENST00000565688 CDH15P55291 814 aa16.1■□□□□ 0.17
CLN3-218ENST00000565688 RAB39AQ14964 217 aa16.1■□□□□ 0.17
CLN3-218ENST00000565688 MSMPQ1L6U9 139 aa16.1■□□□□ 0.17
CLN3-218ENST00000565688 LIPNQ5VXI9 398 aa16.1■□□□□ 0.17
CLN3-218ENST00000565688 RBM45Q8IUH3 476 aaKnown RBP16.1■□□□□ 0.17
CLN3-218ENST00000565688 TAMM41Q96BW9 452 aa16.1■□□□□ 0.17
CLN3-218ENST00000565688 SYT3Q9BQG1 590 aa16.1■□□□□ 0.17
CLN3-218ENST00000565688 C19orf24Q9BVV8 132 aa16.1■□□□□ 0.17
CLN3-218ENST00000565688 TMEM38BQ9NVV0 291 aa16.1■□□□□ 0.17
CLN3-218ENST00000565688 TMEFF2Q9UIK5 374 aaPredicted RBP16.1■□□□□ 0.17
CLN3-218ENST00000565688 ZNF346Q9UL40 294 aaKnown RBP16.1■□□□□ 0.17
CLN3-218ENST00000565688 NBEAL1Q6ZS30 2694 aa16.1■□□□□ 0.17
CLN3-218ENST00000565688 SLC22A23A1A5C7 686 aa16.09■□□□□ 0.17
CLN3-218ENST00000565688 LYNX1G3V0Z9 82 aa16.09■□□□□ 0.17
CLN3-218ENST00000565688 KPNA4O00629 521 aaPredicted RBP16.09■□□□□ 0.17
CLN3-218ENST00000565688 DHHO43323 396 aa16.09■□□□□ 0.17
CLN3-218ENST00000565688 BCL10O95999 233 aa16.09■□□□□ 0.17
CLN3-218ENST00000565688 ASAH2BP0C7U1 165 aa16.09■□□□□ 0.17
CLN3-218ENST00000565688 PGA4P0DJD7 388 aa16.09■□□□□ 0.17
CLN3-218ENST00000565688 PGA3P0DJD8 388 aa16.09■□□□□ 0.17
CLN3-218ENST00000565688 LYNX1P0DP58 116 aa16.09■□□□□ 0.17
CLN3-218ENST00000565688 MRPS11P82912 194 aaKnown RBP16.09■□□□□ 0.17
CLN3-218ENST00000565688 NRN1LQ496H8 165 aa16.09■□□□□ 0.17
CLN3-218ENST00000565688 ELFN2Q5R3F8 820 aa16.09■□□□□ 0.17
CLN3-218ENST00000565688 METTL21CQ5VZV1 264 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms