RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 MYBPC1Q00872 1141 aa14.04□□□□□ -0.16
CLN3-208ENST00000561505 PMS2P3Q13401 168 aa14.04□□□□□ -0.16
CLN3-208ENST00000561505 OR1Q1Q15612 314 aa14.04□□□□□ -0.16
CLN3-208ENST00000561505 HHATQ5VTY9 493 aa14.04□□□□□ -0.16
CLN3-208ENST00000561505 CARD17Q5XLA6 110 aa14.04□□□□□ -0.16
CLN3-208ENST00000561505 LRFN4Q6PJG9 635 aa14.04□□□□□ -0.16
CLN3-208ENST00000561505 SLC2A7Q6PXP3 512 aa14.04□□□□□ -0.16
CLN3-208ENST00000561505 CROCCP2Q86T23 111 aa14.04□□□□□ -0.16
CLN3-208ENST00000561505 MIER2Q8N344 545 aa14.04□□□□□ -0.16
CLN3-208ENST00000561505 BHLHE22Q8NFJ8 381 aaPredicted RBP14.04□□□□□ -0.16
CLN3-208ENST00000561505 ASPNQ9BXN1 380 aa14.04□□□□□ -0.16
CLN3-208ENST00000561505 TCF7L2Q9NQB0 619 aa14.04□□□□□ -0.16
CLN3-208ENST00000561505 PCDHB10Q9UN67 800 aa14.04□□□□□ -0.16
CLN3-208ENST00000561505 ZNF726A6NNF4 738 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 C17orf100A8MU93 164 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 C5orf58C9J3I9 102 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 FMO6PO60774 539 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 RAB36O95755 333 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 PNPP00491 289 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 KITP10721 976 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 ANPEPP15144 967 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 NQO1P15559 274 aaKnown RBP14.03□□□□□ -0.16
CLN3-208ENST00000561505 CDK6Q00534 326 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 CAMK2DQ13557 499 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 RAB39AQ14964 217 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 NRN1LQ496H8 165 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 NXNQ6DKJ4 435 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 BLOC1S3Q6QNY0 202 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 DPPA2Q7Z7J5 298 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 KRT73Q86Y46 540 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 SLC22A24Q8N4F4 322 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 GOLGA6L1Q8N7Z2 621 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 OR6N1Q8NGY5 312 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 OR5J2Q8NH18 312 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 NFKBIDQ8NI38 313 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 TMPRSS13Q9BYE2 586 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 TMEM27Q9HBJ8 222 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 GLTPQ9NZD2 209 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 SLAMF8Q9P0V8 285 aa14.03□□□□□ -0.16
CLN3-208ENST00000561505 TMEM120BA0PK00 339 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 SLC22A23A1A5C7 686 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 PRORSD1PA6NEY8 169 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 LRRN3E7EW58 273 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 ENTPD5O75356 428 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 ERLIN1O75477 346 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 MFN2O95140 757 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 LYPD3O95274 346 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 FSHBP01225 129 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 NAT2P11245 290 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 PPIBP23284 216 aaKnown RBP14.02□□□□□ -0.17
CLN3-208ENST00000561505 MAGEB1P43366 347 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 CSNK1A1P48729 337 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 CDH12P55289 794 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 GALK2Q01415 458 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 HIST3H3Q16695 136 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 PCGF3Q3KNV8 242 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 CEP85LQ5SZL2 805 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 GCNT6Q5T4J0 391 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 GKAP1Q5VSY0 366 aaPredicted RBP14.02□□□□□ -0.17
CLN3-208ENST00000561505 ACSM5Q6NUN0 579 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 ZNF613Q6PF04 617 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 EPGNQ6UW88 154 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 C1QL2Q7Z5L3 287 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 PEG10Q86TG7 708 aaKnown RBP14.02□□□□□ -0.17
CLN3-208ENST00000561505 SEPHS2Q99611 448 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 PAIP2Q9BPZ3 127 aaKnown RBP14.02□□□□□ -0.17
CLN3-208ENST00000561505 RBM4Q9BWF3 364 aaKnown RBP14.02□□□□□ -0.17
CLN3-208ENST00000561505 HINT3Q9NQE9 182 aaKnown RBP14.02□□□□□ -0.17
CLN3-208ENST00000561505 TMEM38BQ9NVV0 291 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 TAS2R5Q9NYW4 299 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 VAPAQ9P0L0 249 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 RAB21Q9UL25 225 aa14.02□□□□□ -0.17
CLN3-208ENST00000561505 TRIM77I1YAP6 450 aa14.01□□□□□ -0.17
CLN3-208ENST00000561505 J3QLI3 93 aa14.01□□□□□ -0.17
CLN3-208ENST00000561505 PPIHO43447 177 aaKnown RBP14.01□□□□□ -0.17
CLN3-208ENST00000561505 MGRN1O60291 552 aa14.01□□□□□ -0.17
CLN3-208ENST00000561505 CLPTM1O96005 669 aa14.01□□□□□ -0.17
CLN3-208ENST00000561505 OR8G3PP0DMU2 310 aa14.01□□□□□ -0.17
CLN3-208ENST00000561505 EPHA1P21709 976 aa14.01□□□□□ -0.17
CLN3-208ENST00000561505 LIMS1P48059 325 aa14.01□□□□□ -0.17
CLN3-208ENST00000561505 ZNF133P52736 654 aaPredicted RBP14.01□□□□□ -0.17
CLN3-208ENST00000561505 BIDP55957 195 aa14.01□□□□□ -0.17
CLN3-208ENST00000561505 PCBP3P57721 371 aaKnown RBP14.01□□□□□ -0.17
CLN3-208ENST00000561505 RGS8P57771 180 aaPredicted RBP14.01□□□□□ -0.17
CLN3-208ENST00000561505 RGS7BPQ6MZT1 257 aaPredicted RBP14.01□□□□□ -0.17
CLN3-208ENST00000561505 PAQR4Q8N4S7 273 aaPredicted RBP14.01□□□□□ -0.17
CLN3-208ENST00000561505 ZNF519Q8TB69 540 aa14.01□□□□□ -0.17
CLN3-208ENST00000561505 MGARPQ8TDB4 240 aa14.01□□□□□ -0.17
CLN3-208ENST00000561505 SLC25A44Q96H78 314 aaPredicted RBP14.01□□□□□ -0.17
CLN3-208ENST00000561505 JMJD8Q96S16 334 aa14.01□□□□□ -0.17
CLN3-208ENST00000561505 ZNF426Q9BUY5 554 aa14.01□□□□□ -0.17
CLN3-208ENST00000561505 PARD6BQ9BYG5 372 aa14.01□□□□□ -0.17
CLN3-208ENST00000561505 C1orf198Q9H425 327 aa14.01□□□□□ -0.17
CLN3-208ENST00000561505 IKZF5Q9H5V7 419 aa14.01□□□□□ -0.17
CLN3-208ENST00000561505 ZNF665Q9H7R5 613 aa14.01□□□□□ -0.17
CLN3-208ENST00000561505 DUSP13Q9UII6 198 aa14.01□□□□□ -0.17
CLN3-208ENST00000561505 DHHO43323 396 aa14□□□□□ -0.17
CLN3-208ENST00000561505 PLPP2O43688 288 aa14□□□□□ -0.17
CLN3-208ENST00000561505 CHP2O43745 196 aa14□□□□□ -0.17
CLN3-208ENST00000561505 IGHV3-13P01766 116 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 203.8 ms