RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 EIF3MQ7L2H7 374 aaKnown RBP1.14□□□□□ -2.23
USP3-209ENST00000558925 GDPD3Q7L5L3 318 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 BIVMQ86UB2 503 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 LHFPL3Q86UP9 236 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 MMAAQ8IVH4 418 aaKnown RBP1.14□□□□□ -2.23
USP3-209ENST00000558925 C11orf53Q8IXP5 236 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 EID2Q8N6I1 236 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 CCDC71LQ8N9Z2 235 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 SUMF2Q8NBJ7 301 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 BBOF1Q8ND07 529 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 FBXL13Q8NEE6 735 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 BPIFCQ8NFQ6 507 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 OR7G2Q8NG99 324 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 FAM81AQ8TBF8 368 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 ZNF502Q8TBZ5 544 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 SLC7A13Q8TCU3 470 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 ACER1Q8TDN7 264 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 ANKRD49Q8WVL7 239 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 ACOT11Q8WXI4 607 aaPredicted RBP1.14□□□□□ -2.23
USP3-209ENST00000558925 NDRG1Q92597 394 aaKnown RBP1.14□□□□□ -2.23
USP3-209ENST00000558925 FRAT1Q92837 279 aaPredicted RBP1.14□□□□□ -2.23
USP3-209ENST00000558925 SLC38A4Q969I6 547 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 TMEM54Q969K7 222 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 ZNF707Q96C28 371 aaPredicted RBP1.14□□□□□ -2.23
USP3-209ENST00000558925 TMEM101Q96IK0 257 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 MAGEB18Q96M61 343 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 RASL11BQ9BPW5 248 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 TEKT3Q9BXF9 490 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 RACGAP1Q9H0H5 632 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 DEFB127Q9H1M4 99 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 NXF3Q9H4D5 531 aaKnown RBP1.14□□□□□ -2.23
USP3-209ENST00000558925 EXO5Q9H790 373 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 RETNQ9HD89 108 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 RPRD1BQ9NQG5 326 aaKnown RBP1.14□□□□□ -2.23
USP3-209ENST00000558925 DAZ3Q9NR90 486 aaKnown RBP1.14□□□□□ -2.23
USP3-209ENST00000558925 PDP1Q9P0J1 537 aaPredicted RBP1.14□□□□□ -2.23
USP3-209ENST00000558925 NUP50Q9UKX7 468 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 TBC1D24Q9ULP9 559 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 PRG3Q9Y2Y8 225 aaPredicted RBP1.14□□□□□ -2.23
USP3-209ENST00000558925 NEUROG3Q9Y4Z2 214 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 SLC25A15Q9Y619 301 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 CDH10Q9Y6N8 788 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 KIF25-AS1Q9Y6Z4 181 aa1.14□□□□□ -2.23
USP3-209ENST00000558925 MTCL1Q9Y4B5 1905 aaKnown RBP1.13□□□□□ -2.23
USP3-209ENST00000558925 TNRQ92752 1358 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 PLEKHG1Q9ULL1 1385 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 ZNF816-ZNF321PA0A0X1KG74 233 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 GOLGA6L7A0A1B0GV03 622 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 A0A1B0GVI7 797 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 A0A1B0GW55 424 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 CIB4A0PJX0 185 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 LRRIQ4A6NIV6 560 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 LRRIQ3A6PVS8 624 aaPredicted RBP1.13□□□□□ -2.23
USP3-209ENST00000558925 C12orf71A8MTZ7 269 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 HIDE1A8MVS5 230 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 SUPT3HB4E1H0 165 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 SPECC1L-ADORA2AF8WAN1 911 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 PANO1I0J062 215 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 AKR7A2O43488 359 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 SOX15O60248 233 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 EEDO75530 441 aaKnown RBP1.13□□□□□ -2.23
USP3-209ENST00000558925 OR2F2O95006 317 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 UTS2O95399 124 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 ACTL6AO96019 429 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 SERPINA5P05154 406 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 C2P06681 752 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 ERCC1P07992 297 aaPredicted RBP1.13□□□□□ -2.23
USP3-209ENST00000558925 CSF3P09919 207 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 ACSM4P0C7M7 580 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 GKN3PP0CG01 181 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 DUX4L2P0CJ85 424 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 DUX4L3P0CJ86 424 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 DUX4L4P0CJ87 422 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 DUX4L5P0CJ88 424 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 DUX4L6P0CJ89 424 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 DUX4L7P0CJ90 424 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 ICAM2P13598 275 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 MGMTP16455 207 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 ZNF24P17028 368 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 TCN1P20061 433 aaPredicted RBP1.13□□□□□ -2.23
USP3-209ENST00000558925 BCKDHBP21953 392 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 HTR1EP28566 365 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 GTF2E2P29084 291 aaKnown RBP1.13□□□□□ -2.23
USP3-209ENST00000558925 PRDX3P30048 256 aaKnown RBP1.13□□□□□ -2.23
USP3-209ENST00000558925 HSD17B2P37059 387 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 CTRLP40313 264 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 AQP2P41181 271 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 NAA10P41227 235 aaPredicted RBP1.13□□□□□ -2.23
USP3-209ENST00000558925 GLP1RP43220 463 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 GPR6P46095 362 aaPredicted RBP1.13□□□□□ -2.23
USP3-209ENST00000558925 UQCRFS1P47985 274 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 NCBP2P52298 156 aaKnown RBP eCLIP1.13□□□□□ -2.23
USP3-209ENST00000558925 SUB1P53999 127 aaKnown RBP eCLIP1.13□□□□□ -2.23
USP3-209ENST00000558925 C21orf59P57076 290 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 MERTKQ12866 999 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 PSG7Q13046 419 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 ITIH4Q14624 930 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 ARHGAP19Q14CB8 494 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 IL17AQ16552 155 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 CCDC14Q49A88 953 aa1.13□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms