RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 GTF2E2P29084 291 aaKnown RBP10.89□□□□□ -0.67
VPS29-211ENST00000553128 SELENOVP59797 346 aa10.89□□□□□ -0.67
VPS29-211ENST00000553128 RBBP4Q09028 425 aa10.89□□□□□ -0.67
VPS29-211ENST00000553128 CAMK2DQ13557 499 aa10.89□□□□□ -0.67
VPS29-211ENST00000553128 CASP8Q14790 479 aa10.89□□□□□ -0.67
VPS29-211ENST00000553128 C9orf139Q6ZV77 190 aa10.89□□□□□ -0.67
VPS29-211ENST00000553128 C4orf33Q8N1A6 199 aa10.89□□□□□ -0.67
VPS29-211ENST00000553128 PARP8Q8N3A8 854 aa10.89□□□□□ -0.67
VPS29-211ENST00000553128 OR52P1PQ8NH57 321 aa10.89□□□□□ -0.67
VPS29-211ENST00000553128 FAM110DQ8TAY7 271 aaPredicted RBP10.89□□□□□ -0.67
VPS29-211ENST00000553128 ZNF519Q8TB69 540 aa10.89□□□□□ -0.67
VPS29-211ENST00000553128 PNPT1Q8TCS8 783 aaKnown RBP10.89□□□□□ -0.67
VPS29-211ENST00000553128 ELMOD3Q96FG2 381 aa10.89□□□□□ -0.67
VPS29-211ENST00000553128 ULBP2Q9BZM5 246 aa10.89□□□□□ -0.67
VPS29-211ENST00000553128 DENND2DQ9H6A0 471 aaPredicted RBP10.89□□□□□ -0.67
VPS29-211ENST00000553128 SLCO1C1Q9NYB5 712 aa10.89□□□□□ -0.67
VPS29-211ENST00000553128 EGFL7Q9UHF1 273 aa10.89□□□□□ -0.67
VPS29-211ENST00000553128 GPR160Q9UJ42 338 aa10.89□□□□□ -0.67
VPS29-211ENST00000553128 ZNF443Q9Y2A4 671 aaPredicted RBP10.89□□□□□ -0.67
VPS29-211ENST00000553128 POLR3KQ9Y2Y1 108 aaPredicted RBP10.89□□□□□ -0.67
VPS29-211ENST00000553128 IGKV1D-42A0A075B6H8 117 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 SLC22A23A1A5C7 686 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 ZSCAN5BA6NJL1 495 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 COPEO14579 308 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 NGFP01138 241 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 IGHV2-70P01814 119 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 SBK2P0C263 348 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 LSP1P33241 339 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 CD80P33681 288 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 CDKN2CP42773 168 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 SLC6A9P48067 706 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 ZNF81P51508 661 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 EMX2Q04743 252 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 DEFB112Q30KQ8 113 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 LIN52Q52LA3 116 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 RPS26P11Q5JNZ5 115 aaPredicted RBP10.88□□□□□ -0.67
VPS29-211ENST00000553128 SPANXN4Q5MJ08 99 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 FIP1L1Q6UN15 594 aaKnown RBP10.88□□□□□ -0.67
VPS29-211ENST00000553128 WDR88Q6ZMY6 472 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 H1FNTQ75WM6 255 aaPredicted RBP10.88□□□□□ -0.67
VPS29-211ENST00000553128 UEVLDQ8IX04 471 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 PEX5LQ8IYB4 626 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 MIER2Q8N344 545 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 OR52E2Q8NGJ4 325 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 OR4F5Q8NH21 305 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 GEMIN6Q8WXD5 167 aaKnown RBP10.88□□□□□ -0.67
VPS29-211ENST00000553128 C11orf40Q8WZ69 217 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 LRR1Q96L50 414 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 PPP1R36Q96LQ0 422 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 DCLRE1CQ96SD1 692 aaKnown RBP10.88□□□□□ -0.67
VPS29-211ENST00000553128 SH3GL3Q99963 347 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 MRI1Q9BV20 369 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 ASIC5Q9NY37 505 aa10.88□□□□□ -0.67
VPS29-211ENST00000553128 NOP53Q9NZM5 478 aaKnown RBP10.88□□□□□ -0.67
VPS29-211ENST00000553128 A0A1B0GUS0 222 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 LOC102725191A0A1B0GVB3 256 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 CLPSL1A2RUU4 121 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 SLC22A31A6NKX4 558 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 G3V4G9 280 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 TM9SF1O15321 606 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 AKAP8O43823 692 aaKnown RBP10.87□□□□□ -0.67
VPS29-211ENST00000553128 PLATP00750 562 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 IGHV3-13P01766 116 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 SHBGP04278 402 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 FAM153BP0C7A2 387 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 KRT4P19013 534 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 MPV17P39210 176 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 MTNR1AP48039 350 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 MMP15P51511 669 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 UCP2P55851 309 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 PAX8Q06710 450 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 BEAN1Q3B7T3 259 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 SPATA46Q5T0L3 261 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 FAM69AQ5T7M9 428 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 ANXA8L1Q5VT79 327 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 TRMT10CQ7L0Y3 403 aaKnown RBP10.87□□□□□ -0.67
VPS29-211ENST00000553128 OR6N1Q8NGY5 312 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 MARCH7Q9H992 704 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 B3GAT2Q9NPZ5 323 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 NPTNQ9Y639 398 aa10.87□□□□□ -0.67
VPS29-211ENST00000553128 A0A087WUJ7 227 aa10.86□□□□□ -0.67
VPS29-211ENST00000553128 TRAV40A0A0B4J280 105 aa10.86□□□□□ -0.67
VPS29-211ENST00000553128 SERPINI2O75830 405 aa10.86□□□□□ -0.67
VPS29-211ENST00000553128 CKAP4Q07065 602 aaKnown RBP10.86□□□□□ -0.67
VPS29-211ENST00000553128 PMS2P3Q13401 168 aa10.86□□□□□ -0.67
VPS29-211ENST00000553128 TAF9Q16594 264 aa10.86□□□□□ -0.67
VPS29-211ENST00000553128 SMU1Q2TAY7 513 aa10.86□□□□□ -0.67
VPS29-211ENST00000553128 FAM209AQ5JX71 171 aa10.86□□□□□ -0.67
VPS29-211ENST00000553128 ZNF362Q5T0B9 420 aaPredicted RBP10.86□□□□□ -0.67
VPS29-211ENST00000553128 RNF220Q5VTB9 566 aa10.86□□□□□ -0.67
VPS29-211ENST00000553128 BRD3OSQ6XYD6 125 aa10.86□□□□□ -0.67
VPS29-211ENST00000553128 LRRC34Q8IZ02 419 aa10.86□□□□□ -0.67
VPS29-211ENST00000553128 SLC22A24Q8N4F4 322 aa10.86□□□□□ -0.67
VPS29-211ENST00000553128 IPCEF1Q8WWN9 437 aaPredicted RBP10.86□□□□□ -0.67
VPS29-211ENST00000553128 TEX37Q96LM6 180 aa10.86□□□□□ -0.67
VPS29-211ENST00000553128 CCDC115Q96NT0 180 aa10.86□□□□□ -0.67
VPS29-211ENST00000553128 RSPO3Q9BXY4 272 aaPredicted RBP10.86□□□□□ -0.67
VPS29-211ENST00000553128 CHIAQ9BZP6 476 aa10.86□□□□□ -0.67
VPS29-211ENST00000553128 AKTIPQ9H8T0 292 aa10.86□□□□□ -0.67
VPS29-211ENST00000553128 PATZ1Q9HBE1 687 aaKnown RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms