RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 ABI3Q9P2A4 366 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 RHBDD3Q9Y3P4 386 aa14.33□□□□□ -0.12
CUX1-211ENST00000546411 M0QYG6 137 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 PRICKLE3O43900 615 aaPredicted RBP14.32□□□□□ -0.12
CUX1-211ENST00000546411 PEBP1P30086 187 aaKnown RBP14.32□□□□□ -0.12
CUX1-211ENST00000546411 UBE2MP61081 183 aaKnown RBP14.32□□□□□ -0.12
CUX1-211ENST00000546411 C9orf135Q5VTT2 229 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 C1orf140Q5VVS0 124 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 OR10K2Q6IF99 312 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 TSSK4Q6SA08 328 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 ZNF160Q9HCG1 818 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 POLE3Q9NRF9 147 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 GPR179Q6PRD1 2367 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 A0A1B0GTH9 108 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 PRAMEF27A3QJZ7 478 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 ZFAND5O76080 213 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 FAM69AQ5T7M9 428 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 TMEM52Q8NDY8 209 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 PNPLA2Q96AD5 504 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 SPACA5Q96QH8 159 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 ATF6BQ99941 703 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 MED29Q9NX70 200 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 C14orf166Q9Y224 244 aaKnown RBP14.32□□□□□ -0.12
CUX1-211ENST00000546411 IGHV5-51A0A0C4DH38 117 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 SC5DO75845 299 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 IFNA21P01568 189 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 LCATP04180 440 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 AKAIN1P0CW23 69 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 IFNGR1P15260 489 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 POLR2HP52434 150 aaKnown RBP14.32□□□□□ -0.12
CUX1-211ENST00000546411 CRYBA2P53672 197 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 CDC20Q12834 499 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 CDK5R1Q15078 307 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 CDK10Q15131 360 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 MRM1Q6IN84 353 aaKnown RBP14.32□□□□□ -0.12
CUX1-211ENST00000546411 ALKAL2Q6UX46 152 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 GLB1L2Q8IW92 636 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 IL22RA1Q8N6P7 574 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 NT5CQ8TCD5 201 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 STT3BQ8TCJ2 826 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 ASB12Q8WXK4 309 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 TOMM40LQ969M1 308 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 CFHR5Q9BXR6 569 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 MFFQ9GZY8 342 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 KCNG2Q9UJ96 466 aa14.32□□□□□ -0.12
CUX1-211ENST00000546411 RAB40ALP0C0E4 278 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 ANXA7P20073 488 aaKnown RBP14.31□□□□□ -0.12
CUX1-211ENST00000546411 RBMXP38159 391 aaKnown RBP14.31□□□□□ -0.12
CUX1-211ENST00000546411 CASRP41180 1078 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 DCAF7P61962 342 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 ELAVL1Q15717 326 aaKnown RBP14.31□□□□□ -0.12
CUX1-211ENST00000546411 DCXRQ7Z4W1 244 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 CHD5Q8TDI0 1954 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 RAB40AQ8WXH6 277 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 OR2M2Q96R28 347 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 LDAHQ9H6V9 325 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 MOKQ9UQ07 419 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 P04436 131 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 ERCC1P07992 297 aaPredicted RBP14.31□□□□□ -0.12
CUX1-211ENST00000546411 HTR2AP28223 471 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 ZNF628Q5EBL2 1059 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 AADACL4Q5VUY2 407 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 TMEM244Q5VVB8 128 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 FAM198BQ6UWH4 519 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 COMMD7Q86VX2 200 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 BPIFB2Q8N4F0 458 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 IL17RDQ8NFM7 739 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 MEPEQ9NQ76 525 aaPredicted RBP14.31□□□□□ -0.12
CUX1-211ENST00000546411 MBD2Q9UBB5 411 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 FBXL2Q9UKC9 423 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 CAMK2AQ9UQM7 478 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 A6NIZ1 184 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 TMEM212A6NML5 194 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 ZNF850A8MQ14 1090 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 ETV6P41212 452 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 RAP1BP61224 184 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 RAP1AP62834 184 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 FZD2Q14332 565 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 NKAIN1Q4KMZ8 207 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 KIAA0907Q7Z7F0 614 aaPredicted RBP14.31□□□□□ -0.12
CUX1-211ENST00000546411 CRIPAKQ8N1N5 446 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 HOXB13Q92826 284 aaPredicted RBP14.31□□□□□ -0.12
CUX1-211ENST00000546411 KIAA1143Q96AT1 154 aaPredicted RBP14.31□□□□□ -0.12
CUX1-211ENST00000546411 SMIM19Q96E16 107 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 ENKD1Q9H0I2 346 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 KLK11Q9UBX7 282 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 NOX1Q9Y5S8 564 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 SBF1O95248 1867 aa14.31□□□□□ -0.12
CUX1-211ENST00000546411 WDR90Q96KV7 1748 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 S100GP29377 79 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 EEF1A1P68104 462 aaKnown RBP14.3□□□□□ -0.12
CUX1-211ENST00000546411 PRICKLE4Q2TBC4 344 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 CMTM4Q8IZR5 234 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 FGGYQ96C11 551 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 HAVCR1Q96D42 359 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 A0A1W2PNR3 127 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 FARS2O95363 451 aaKnown RBP14.3□□□□□ -0.12
CUX1-211ENST00000546411 ZNF28P17035 718 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 NUDT1P36639 197 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 PPICP45877 212 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms