RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 PHYHD1Q5SRE7 291 aa11.34□□□□□ -0.59
RTN3-213ENST00000543552 LINC00114Q6XXX2 140 aa11.34□□□□□ -0.59
RTN3-213ENST00000543552 SLC35D2Q76EJ3 337 aa11.34□□□□□ -0.59
RTN3-213ENST00000543552 DPPA2Q7Z7J5 298 aa11.34□□□□□ -0.59
RTN3-213ENST00000543552 ZNF786Q8N393 782 aa11.34□□□□□ -0.59
RTN3-213ENST00000543552 VANGL1Q8TAA9 524 aaPredicted RBP11.34□□□□□ -0.59
RTN3-213ENST00000543552 HPS1Q92902 700 aa11.34□□□□□ -0.59
RTN3-213ENST00000543552 ZNF566Q969W8 418 aa11.34□□□□□ -0.59
RTN3-213ENST00000543552 MSI2Q96DH6 328 aaKnown RBP11.34□□□□□ -0.59
RTN3-213ENST00000543552 TXNDC15Q96J42 360 aa11.34□□□□□ -0.59
RTN3-213ENST00000543552 PCDHAC1Q9H158 963 aa11.34□□□□□ -0.59
RTN3-213ENST00000543552 MS4A5Q9H3V2 200 aa11.34□□□□□ -0.59
RTN3-213ENST00000543552 ZNF385DQ9H6B1 395 aa11.34□□□□□ -0.59
RTN3-213ENST00000543552 CHODLQ9H9P2 273 aa11.34□□□□□ -0.59
RTN3-213ENST00000543552 NPHS2Q9NP85 383 aa11.34□□□□□ -0.59
RTN3-213ENST00000543552 SLC7A7Q9UM01 511 aa11.34□□□□□ -0.59
RTN3-213ENST00000543552 A0A0G2JND7 137 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 LRRN3E7EW58 273 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 C11orf98E9PRG8 122 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 STAMBPO95630 424 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 CH25HO95992 272 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 ADRA2AP08913 450 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 OR8G3PP0DMU2 310 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 UMPSP11172 480 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 ZNF14P17017 642 aaPredicted RBP11.33□□□□□ -0.6
RTN3-213ENST00000543552 IGFBP5P24593 272 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 GLRXP35754 106 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 GIPRP48546 466 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 RAB1AP62820 205 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 PIGFQ07326 219 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 ZP4Q12836 540 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 FAM120AOSQ5T036 256 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 NANOGNBQ7Z5D8 188 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 RETREG3Q86VR2 466 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 CDK20Q8IZL9 346 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 GPR32P1Q8NGA4 272 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 UBASH3BQ8TF42 649 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 MRPL24Q96A35 216 aaKnown RBP11.33□□□□□ -0.6
RTN3-213ENST00000543552 THOC1Q96FV9 657 aaKnown RBP11.33□□□□□ -0.6
RTN3-213ENST00000543552 SLC25A44Q96H78 314 aaPredicted RBP11.33□□□□□ -0.6
RTN3-213ENST00000543552 WFDC6Q9BQY6 131 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 POLR2J2Q9GZM3 115 aaKnown RBP11.33□□□□□ -0.6
RTN3-213ENST00000543552 POLR2J3Q9H1A7 115 aaKnown RBP11.33□□□□□ -0.6
RTN3-213ENST00000543552 C1orf198Q9H425 327 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 GLTPQ9NZD2 209 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 SLC7A8Q9UHI5 535 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 GPR160Q9UJ42 338 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 BAG5Q9UL15 447 aa11.33□□□□□ -0.6
RTN3-213ENST00000543552 ZNF346Q9UL40 294 aaKnown RBP11.33□□□□□ -0.6
RTN3-213ENST00000543552 YLPM1P49750 1951 aaKnown RBP11.33□□□□□ -0.6
RTN3-213ENST00000543552 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.33□□□□□ -0.62e-17■■■■□ 24.5
RTN3-213ENST00000543552 SLC22A23A1A5C7 686 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 SH3PXD2BA1X283 911 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 KPNA4O00629 521 aaPredicted RBP11.32□□□□□ -0.6
RTN3-213ENST00000543552 EDF1O60869 148 aaKnown RBP11.32□□□□□ -0.6
RTN3-213ENST00000543552 TGFAP01135 160 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 PTHP01270 115 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 IFNA14P01570 189 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 IGHG1P01857 330 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 TACSTD2P09758 323 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 ZNF35P13682 527 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 PCMT1P22061 227 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 APEX1P27695 318 aaKnown RBP11.32□□□□□ -0.6
RTN3-213ENST00000543552 SELENOVP59797 346 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 SELPLGQ14242 412 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 NPTX1Q15818 432 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 VMACQ2NL98 169 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 NRN1LQ496H8 165 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 TMEM53Q6P2H8 277 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 NHLRC1Q6VVB1 395 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 CCDC80Q76M96 950 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 SLC22A24Q8N4F4 322 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 OR10A6Q8NH74 314 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 TMEM54Q969K7 222 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 TAMM41Q96BW9 452 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 MS4A3Q96HJ5 214 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 ZNF426Q9BUY5 554 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 STX18Q9P2W9 335 aaKnown RBP11.32□□□□□ -0.6
RTN3-213ENST00000543552 REV1Q9UBZ9 1251 aa11.32□□□□□ -0.6
RTN3-213ENST00000543552 A0A1W2PRG6 482 aa11.31□□□□□ -0.6
RTN3-213ENST00000543552 TMEM129A0AVI4 362 aa11.31□□□□□ -0.6
RTN3-213ENST00000543552 BBIP1A8MTZ0 92 aa11.31□□□□□ -0.6
RTN3-213ENST00000543552 CENPBD1B2RD01 187 aa11.31□□□□□ -0.6
RTN3-213ENST00000543552 MCIDASD6RGH6 385 aa11.31□□□□□ -0.6
RTN3-213ENST00000543552 MGRN1O60291 552 aa11.31□□□□□ -0.6
RTN3-213ENST00000543552 BCL10O95999 233 aa11.31□□□□□ -0.6
RTN3-213ENST00000543552 NPPAP01160 153 aa11.31□□□□□ -0.6
RTN3-213ENST00000543552 SERPINA5P05154 406 aa11.31□□□□□ -0.6
RTN3-213ENST00000543552 TROVE2P10155 538 aaKnown RBP eCLIP11.31□□□□□ -0.6
RTN3-213ENST00000543552 NR2C1P13056 603 aa11.31□□□□□ -0.6
RTN3-213ENST00000543552 RBM34P42696 430 aaKnown RBP11.31□□□□□ -0.6
RTN3-213ENST00000543552 DAP3P51398 398 aaKnown RBP11.31□□□□□ -0.6
RTN3-213ENST00000543552 ZNF84P51523 738 aa11.31□□□□□ -0.6
RTN3-213ENST00000543552 CLRN1P58418 232 aa11.31□□□□□ -0.6
RTN3-213ENST00000543552 MAPRE2Q15555 327 aa11.31□□□□□ -0.6
RTN3-213ENST00000543552 SLC36A2Q495M3 483 aa11.31□□□□□ -0.6
RTN3-213ENST00000543552 MMEL1Q495T6 779 aa11.31□□□□□ -0.6
RTN3-213ENST00000543552 COQ5Q5HYK3 327 aa11.31□□□□□ -0.6
RTN3-213ENST00000543552 ERICH5Q6P6B1 374 aa11.31□□□□□ -0.6
RTN3-213ENST00000543552 WDR88Q6ZMY6 472 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms