RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	ZNF615	Q8N8J6	731 aa		11.37	□□□□□ -0.59
RNF4-222	ENST00000541204	MOSPD2	Q8NHP6	518 aa		11.37	□□□□□ -0.59
RNF4-222	ENST00000541204	PHOSPHO1	Q8TCT1	267 aa		11.37	□□□□□ -0.59
RNF4-222	ENST00000541204	PTPMT1	Q8WUK0	201 aa	Predicted RBP	11.37	□□□□□ -0.59
RNF4-222	ENST00000541204	PHYHIP	Q92561	330 aa		11.37	□□□□□ -0.59
RNF4-222	ENST00000541204	HOXB13	Q92826	284 aa	Predicted RBP	11.37	□□□□□ -0.59
RNF4-222	ENST00000541204	ZDHHC12	Q96GR4	267 aa		11.37	□□□□□ -0.59
RNF4-222	ENST00000541204	SFXN2	Q96NB2	322 aa		11.37	□□□□□ -0.59
RNF4-222	ENST00000541204	NMNAT2	Q9BZQ4	307 aa		11.37	□□□□□ -0.59
RNF4-222	ENST00000541204	EML5	Q05BV3	1969 aa		11.37	□□□□□ -0.59
RNF4-222	ENST00000541204	WDFY3	Q8IZQ1	3526 aa		11.37	□□□□□ -0.59
RNF4-222	ENST00000541204	HEATR5A	Q86XA9	2040 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	BLOC1S5-TXNDC5	H3BN57	136 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204		H3BSH0	61 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	GPR143	P51810	404 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	PSMA6	P60900	246 aa	Known RBP	11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	IGLV3-21	P80748	117 aa	Predicted RBP	11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	FUT7	Q11130	342 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	LINC01590	Q5TEZ4	76 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	PXDC1	Q5TGL8	231 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	PTCRA	Q6ISU1	281 aa	Predicted RBP	11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	NHLRC1	Q6VVB1	395 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	STAC2	Q6ZMT1	411 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	ZNF550	Q7Z398	422 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	OR6V1	Q8N148	313 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	OR52B4	Q8NGK2	314 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	RPS4Y2	Q8TD47	263 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	LCOR	Q96JN0	433 aa	Predicted RBP	11.36	□□□□□ -0.59
RNF4-222	ENST00000541204		Q96M85	177 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	ALG12	Q9BV10	488 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	SEMA4C	Q9C0C4	833 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	NXF5	Q9H1B4	397 aa	Known RBP	11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	TCF7L1	Q9HCS4	588 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	RABL2A	Q9UBK7	228 aa	Predicted RBP	11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	RABL2B	Q9UNT1	228 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204		A0A087WUJ7	227 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	PLSCR5	A0PG75	271 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	TMEM72	A0PK05	275 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	ITGA10	O75578	1167 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	GLCE	O94923	617 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	CLPS	P04118	112 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	FOLR1	P15328	257 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	ADRA2C	P18825	462 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	CDKN2A	P42771	156 aa	Known RBP	11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	EPHA4	P54764	986 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	CFHR1	Q03591	330 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	ZP2	Q05996	745 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	DMWD	Q09019	674 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	PLA2G7	Q13093	441 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	SMAD2	Q15796	467 aa	Known RBP	11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	ZNF141	Q15928	474 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	SLC35D3	Q5M8T2	416 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	OR5M10	Q6IEU7	315 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	GALNT11	Q8NCW6	608 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	THEM6	Q8WUY1	208 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	RBPMS	Q93062	196 aa	Known RBP	11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	HAVCR1	Q96D42	359 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	MRPL48	Q96GC5	212 aa	Known RBP	11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	ADO	Q96SZ5	270 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	RXFP3	Q9NSD7	469 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	KLHDC2	Q9Y2U9	406 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204	ZNF337	Q9Y3M9	751 aa		11.36	□□□□□ -0.59
RNF4-222	ENST00000541204		A0A1B0GTH9	108 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	NPIPB9	F8W1W9	429 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204		L7N2F9	121 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	CREBL2	O60519	120 aa	Predicted RBP	11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	PIAS2	O75928	621 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	IFNGR1	P15260	489 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	ART1	P52961	327 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	TAS2R20	P59543	309 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	ZNF684	Q5T5D7	378 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	OLFML2A	Q68BL7	652 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	TMEM151B	Q8IW70	566 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	OR1L3	Q8NH93	324 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	ZNF524	Q96C55	264 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	TAS2R5	Q9NYW4	299 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	MRPS17	Q9Y2R5	130 aa	Known RBP	11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	ARPC3	O15145	178 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	SULT1B1	O43704	296 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	RAB40AL	P0C0E4	278 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	CPN1	P15169	458 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	AQP2	P41181	271 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	EFNA3	P52797	238 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	CBFB	Q13951	182 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	NHLRC3	Q5JS37	347 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	TSSK4	Q6SA08	328 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	C3P1	Q6ZMU1	363 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	ADGRG3	Q86Y34	549 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	SPIC	Q8N5J4	248 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	EID2	Q8N6I1	236 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	RAB40A	Q8WXH6	277 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	EVA1A	Q9H8M9	152 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	LANCL2	Q9NS86	450 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	FRRS1L	Q9P0K9	344 aa		11.35	□□□□□ -0.59
RNF4-222	ENST00000541204	IGHV1OR21-1	A0A087WYE8	117 aa		11.34	□□□□□ -0.59
RNF4-222	ENST00000541204	ACOT7	O00154	380 aa		11.34	□□□□□ -0.59
RNF4-222	ENST00000541204	MAS1	P04201	325 aa		11.34	□□□□□ -0.59
RNF4-222	ENST00000541204	POU3F2	P20265	443 aa	Predicted RBP	11.34	□□□□□ -0.59
RNF4-222	ENST00000541204	NFYA	P23511	347 aa	Predicted RBP	11.34	□□□□□ -0.59
RNF4-222	ENST00000541204	ODF4	Q2M2E3	257 aa		11.34	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms