RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 FAM86B1Q8N7N1 296 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 MOSPD2Q8NHP6 518 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 ASB10Q8WXI3 467 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 HIST1H2ACQ93077 130 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 NMD3Q96D46 503 aaKnown RBP12.34□□□□□ -0.43
USP28-209ENST00000540925 BPIFA2Q96DR5 249 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 C18orf12Q96KH6 178 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 Q96MF0 132 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 CCT8L2Q96SF2 557 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 ULBP2Q9BZM5 246 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 NOX3Q9HBY0 568 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 B3GAT2Q9NPZ5 323 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 CBLN4Q9NTU7 201 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 RHCGQ9UBD6 479 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 EGFL7Q9UHF1 273 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 MOKQ9UQ07 419 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 ENPP4Q9Y6X5 453 aa12.34□□□□□ -0.43
USP28-209ENST00000540925 A0A087WUU8 490 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 BLOC1S5-TXNDC5H3BN57 136 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 SEC14L2O76054 403 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 IGHV4-39P01824 125 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 CELA3BP08861 270 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 UMPSP11172 480 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 MAKP20794 623 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 ATP5J2P56134 94 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 MELKQ14680 651 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 KRT72Q14CN4 511 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 TRAM2Q15035 370 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 ETFDHQ16134 617 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 MST1LQ2TV78 715 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 AGAP6Q5VW22 663 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 GLYATQ6IB77 296 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 MDP1Q86V88 176 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 RNF113BQ8IZP6 322 aaKnown RBP12.33□□□□□ -0.44
USP28-209ENST00000540925 DEPDC4Q8N2C3 294 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 MUC15Q8N387 334 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 FITM2Q8N6M3 262 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 RNF148Q8N7C7 305 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 LRRC75AQ8NAA5 344 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 FAM156AQ8NDB6 213 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 OR6N1Q8NGY5 312 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 ACOT11Q8WXI4 607 aaPredicted RBP12.33□□□□□ -0.44
USP28-209ENST00000540925 ZNF566Q969W8 418 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 FAM162AQ96A26 154 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 DHRS1Q96LJ7 313 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 FOXB1Q99853 325 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 FNDC11Q9BVV2 318 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 ANKRD19PQ9H560 264 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 ADA2Q9NZK5 511 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 NDUFAF4Q9P032 175 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 RPS6KA6Q9UK32 745 aa12.33□□□□□ -0.44
USP28-209ENST00000540925 A0A1W2PRQ8 180 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 TRIM64A6NGJ6 449 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 TRIM64BA6NI03 449 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 NDUFS7O75251 213 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 FAM107AO95990 144 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 BCL10O95999 233 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 IGHMP01871 453 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 HLA-HP01893 362 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 F13BP05160 661 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 B4GALT1P15291 398 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 APOBEC3AP31941 199 aaPredicted RBP12.32□□□□□ -0.44
USP28-209ENST00000540925 ARR3P36575 388 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 VLDLRP98155 873 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 HGFACQ04756 655 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 DGCR6Q14129 220 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 LAPTM4AQ15012 233 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 SWI5Q1ZZU3 235 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 SPATS1Q496A3 300 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 ZNF813Q6ZN06 617 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 MBOAT2Q6ZWT7 520 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 FKBP9P1Q75LS8 142 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 PIWIL3Q7Z3Z3 882 aaKnown RBP12.32□□□□□ -0.44
USP28-209ENST00000540925 NRMQ8IXM6 262 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 SLC7A13Q8TCU3 470 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 FUZQ9BT04 418 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 GSX1Q9H4S2 264 aaPredicted RBP12.32□□□□□ -0.44
USP28-209ENST00000540925 NMNAT1Q9HAN9 279 aaPredicted RBP12.32□□□□□ -0.44
USP28-209ENST00000540925 INIPQ9NRY2 104 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 GDF2Q9UK05 429 aaPredicted RBP12.32□□□□□ -0.44
USP28-209ENST00000540925 POU2F3Q9UKI9 436 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 POFUT2Q9Y2G5 429 aa12.32□□□□□ -0.44
USP28-209ENST00000540925 ARFGEF3Q5TH69 2177 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 IGHV2OR16-5A0A0B4J2B6 119 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 A0A1W2PRG6 482 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 H7C1Q1 480 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 H7C417 338 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 DHHO43323 396 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 TRMUO75648 421 aaKnown RBP12.31□□□□□ -0.44
USP28-209ENST00000540925 IGHG1P01857 330 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 CRYAAP02489 173 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 INHBBP09529 407 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 IFI30P13284 250 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 ACADSP16219 412 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 ZNF14P17017 642 aaPredicted RBP12.31□□□□□ -0.44
USP28-209ENST00000540925 ZNF26P17031 533 aaPredicted RBP12.31□□□□□ -0.44
USP28-209ENST00000540925 IFNA8P32881 189 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 FABP6P51161 128 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 DAP3P51398 398 aaKnown RBP12.31□□□□□ -0.44
USP28-209ENST00000540925 ANKDD1AQ495B1 522 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms