RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 APOPT1Q96IL0 206 aa9.88□□□□□ -0.83
CLSTN3-209ENST00000539982 TSPAN32Q96QS1 320 aa9.88□□□□□ -0.83
CLSTN3-209ENST00000539982 PANX1Q96RD7 426 aa9.88□□□□□ -0.83
CLSTN3-209ENST00000539982 FOXB1Q99853 325 aa9.88□□□□□ -0.83
CLSTN3-209ENST00000539982 EMC6Q9BV81 110 aa9.88□□□□□ -0.83
CLSTN3-209ENST00000539982 SPATA9Q9BWV2 254 aa9.88□□□□□ -0.83
CLSTN3-209ENST00000539982 PLEK2Q9NYT0 353 aa9.88□□□□□ -0.83
CLSTN3-209ENST00000539982 CALML5Q9NZT1 146 aa9.88□□□□□ -0.83
CLSTN3-209ENST00000539982 SLC17A7Q9P2U7 560 aa9.88□□□□□ -0.83
CLSTN3-209ENST00000539982 ZNF443Q9Y2A4 671 aaPredicted RBP9.88□□□□□ -0.83
CLSTN3-209ENST00000539982 CHST2Q9Y4C5 530 aa9.88□□□□□ -0.83
CLSTN3-209ENST00000539982 PRKDCP78527 4128 aaKnown RBP9.88□□□□□ -0.83
CLSTN3-209ENST00000539982 POLR3GO15318 223 aaPredicted RBP9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 FOXH1O75593 365 aa9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 PATE4P0C8F1 98 aa9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 FAM157BP0CG42 384 aa9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 HLA-DOBP13765 273 aa9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 GRPRP30550 384 aa9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 ARMCX4Q5H9R4 360 aa9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 C6orf89Q6UWU4 347 aa9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 NHLRC1Q6VVB1 395 aa9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 PIWIL3Q7Z3Z3 882 aaKnown RBP9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 SKA3Q8IX90 412 aa9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 BCL6BQ8N143 479 aaPredicted RBP9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 ADPRHL1Q8NDY3 354 aa9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 OR6N1Q8NGY5 312 aa9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 C11orf40Q8WZ69 217 aa9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 SLC38A4Q969I6 547 aa9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 TXNDC15Q96J42 360 aa9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 PPP1R36Q96LQ0 422 aa9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 GAL3ST1Q99999 423 aa9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 ULBP2Q9BZM5 246 aa9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 C12orf10Q9HB07 376 aa9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 P2RX2Q9UBL9 471 aa9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 LEF1Q9UJU2 399 aaPredicted RBP9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 CACNG2Q9Y698 323 aa9.87□□□□□ -0.83
CLSTN3-209ENST00000539982 TRAV36DV7A0A075B6V5 113 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 ZNF726A6NNF4 738 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 E9PBE3 544 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 KRT75O95678 551 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 HPRP00739 348 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 MT-ND5P03915 603 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 LCKP06239 509 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 NQO1P15559 274 aaKnown RBP9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 MDKP21741 143 aaPredicted RBP9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 CBLP22681 906 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 CDKN2CP42773 168 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 CRISP3P54108 245 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 HOXC5Q00444 222 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 RBBP4Q09028 425 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 LRRC74AQ0VAA2 488 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 SLC9A3R2Q15599 337 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 TSTQ16762 297 aaKnown RBP9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 KLF17Q5JT82 389 aaPredicted RBP9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 HIST2H2BDQ6DRA6 164 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 LEG1Q6P5S2 330 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 PAQR4Q8N4S7 273 aaPredicted RBP9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 GLB1L3Q8NCI6 653 aaPredicted RBP9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 DEFB108BQ8NET1 73 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 SLC30A7Q8NEW0 376 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 FGFBP3Q8TAT2 258 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 TCP10LQ8TDR4 215 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 ST7LQ8TDW4 575 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 SLC38A5Q8WUX1 472 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 CCL17Q92583 94 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 TAF15Q92804 592 aaKnown RBP eCLIP9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 SLC35B4Q969S0 331 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 ELMOD3Q96FG2 381 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 SLC41A3Q96GZ6 507 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 ZNF48Q96MX3 618 aaPredicted RBP9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 SAP30LQ9HAJ7 183 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 MMP26Q9NRE1 261 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 RPS6KB2Q9UBS0 482 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 PURGQ9UJV8 347 aaKnown RBP9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 IFT52Q9Y366 437 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 MMP24Q9Y5R2 645 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 AUP1Q9Y679 476 aa9.86□□□□□ -0.83
CLSTN3-209ENST00000539982 A0A087WUJ7 227 aa9.85□□□□□ -0.83
CLSTN3-209ENST00000539982 A0A0G2JPF8 293 aa9.85□□□□□ -0.83
CLSTN3-209ENST00000539982 HNRNPCL2B2RXH8 293 aa9.85□□□□□ -0.83
CLSTN3-209ENST00000539982 HNRNPCL3B7ZW38 293 aa9.85□□□□□ -0.83
CLSTN3-209ENST00000539982 HNRNPCL1O60812 293 aaKnown RBP9.85□□□□□ -0.83
CLSTN3-209ENST00000539982 BCHEP06276 602 aa9.85□□□□□ -0.83
CLSTN3-209ENST00000539982 HNRNPCL4P0DMR1 293 aa9.85□□□□□ -0.83
CLSTN3-209ENST00000539982 OR8G3PP0DMU2 310 aa9.85□□□□□ -0.83
CLSTN3-209ENST00000539982 MVDP53602 400 aa9.85□□□□□ -0.83
CLSTN3-209ENST00000539982 UCP2P55851 309 aa9.85□□□□□ -0.83
CLSTN3-209ENST00000539982 ERVS71-1P61550 626 aa9.85□□□□□ -0.83
CLSTN3-209ENST00000539982 SLC3A1Q07837 685 aa9.85□□□□□ -0.83
CLSTN3-209ENST00000539982 ZNF154Q13106 437 aa9.85□□□□□ -0.83
CLSTN3-209ENST00000539982 FAM209AQ5JX71 171 aa9.85□□□□□ -0.83
CLSTN3-209ENST00000539982 ZNF771Q7L3S4 317 aaPredicted RBP9.85□□□□□ -0.83
CLSTN3-209ENST00000539982 MIER2Q8N344 545 aa9.85□□□□□ -0.83
CLSTN3-209ENST00000539982 SLC22A24Q8N4F4 322 aa9.85□□□□□ -0.83
CLSTN3-209ENST00000539982 OR6S1Q8NH40 331 aa9.85□□□□□ -0.83
CLSTN3-209ENST00000539982 TMIGD2Q96BF3 282 aa9.85□□□□□ -0.83
CLSTN3-209ENST00000539982 TEX37Q96LM6 180 aa9.85□□□□□ -0.83
CLSTN3-209ENST00000539982 OR52E6Q96RD3 313 aa9.85□□□□□ -0.83
CLSTN3-209ENST00000539982 BCL2L14Q9BZR8 327 aa9.85□□□□□ -0.83
CLSTN3-209ENST00000539982 OR51B6Q9H340 312 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms