RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 FGD3Q5JSP0 725 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 PHYHD1Q5SRE7 291 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 ANKRD16Q6P6B7 361 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 PODNL1Q6PEZ8 512 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 KLHL17Q6TDP4 642 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 DHFR2Q86XF0 187 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 MOSPD2Q8NHP6 518 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 POP5Q969H6 163 aaKnown RBP13.17□□□□□ -0.3
CPSF1-208ENST00000532560 TMEM54Q969K7 222 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 SLC25A44Q96H78 314 aaPredicted RBP13.17□□□□□ -0.3
CPSF1-208ENST00000532560 CLPTM1LQ96KA5 538 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 INIPQ9NRY2 104 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 PLEKHA6Q9Y2H5 1048 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 ALPK2Q86TB3 2170 aa13.17□□□□□ -0.3
CPSF1-208ENST00000532560 CSMD1Q96PZ7 3565 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 CREBBPQ92793 2442 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 TRBV4-1A0A0J9YWV2 114 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 EFCAB9A8MZ26 197 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 CENPBD1B2RD01 187 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 MCIDASD6RGH6 385 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 CLOCKO15516 846 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 DIRAS1O95057 198 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 BAG2O95816 211 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 BCL10O95999 233 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 PLAUP00749 431 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 IGHG1P01857 330 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 PGA4P0DJD7 388 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 PGA3P0DJD8 388 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 HOXB1P14653 301 aaPredicted RBP13.16□□□□□ -0.3
CPSF1-208ENST00000532560 PAX7P23759 505 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 MAGEA2P43356 314 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 IST1P53990 364 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 ARF1P84077 181 aaKnown RBP13.16□□□□□ -0.3
CPSF1-208ENST00000532560 MS4A2Q01362 244 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 MELKQ14680 651 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 ALG10Q5BKT4 473 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 ADAM5Q6NVV9 412 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 TBPL2Q6SJ96 375 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 TMEM108Q6UXF1 575 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 C20orf204Q6ZNR8 217 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 TMPRSS11FQ6ZWK6 438 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 ZNF627Q7L945 461 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 RRM2BQ7LG56 351 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 PIWIL3Q7Z3Z3 882 aaKnown RBP13.16□□□□□ -0.3
CPSF1-208ENST00000532560 CDK20Q8IZL9 346 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 OR6N1Q8NGY5 312 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 ASB10Q8WXI3 467 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 ZNF566Q969W8 418 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 CCDC124Q96CT7 223 aaKnown RBP13.16□□□□□ -0.3
CPSF1-208ENST00000532560 MBD6Q96DN6 1003 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 ZNF837Q96EG3 531 aaPredicted RBP13.16□□□□□ -0.3
CPSF1-208ENST00000532560 ZNF347Q96SE7 839 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 SEPHS2Q99611 448 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 FUZQ9BT04 418 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 ULBP2Q9BZM5 246 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 UBTD1Q9HAC8 227 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 CCM2LQ9NUG4 571 aaPredicted RBP13.16□□□□□ -0.3
CPSF1-208ENST00000532560 GLTPQ9NZD2 209 aa13.16□□□□□ -0.3
CPSF1-208ENST00000532560 CDC42EP2O14613 210 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 HS3ST1O14792 307 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 IGHMP01871 453 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 F13BP05160 661 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 CD53P19397 219 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 PTAFRP25105 342 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 GPR4P46093 362 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 LIMS1P48059 325 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 ZNF83P51522 516 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 UBE2NP61088 152 aaKnown RBP13.15□□□□□ -0.3
CPSF1-208ENST00000532560 SPIBQ01892 262 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 FHL1Q13642 323 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 KEAP1Q14145 624 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 SEC23BQ15437 767 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 ACKR1Q16570 336 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 IZUMO2Q6UXV1 221 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 OAFQ86UD1 273 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 MEX3DQ86XN8 651 aaKnown RBP13.15□□□□□ -0.3
CPSF1-208ENST00000532560 ZDHHC21Q8IVQ6 265 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 LRRC75AQ8NAA5 344 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 OR4K5Q8NGD3 323 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 OR13C2Q8NGS9 318 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 FAM192AQ9GZU8 254 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 MAGIXQ9H6Y5 334 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 MOV10Q9HCE1 1003 aaKnown RBP13.15□□□□□ -0.3
CPSF1-208ENST00000532560 KRCC1Q9NPI7 259 aaPredicted RBP13.15□□□□□ -0.3
CPSF1-208ENST00000532560 MGAT4BQ9UQ53 548 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 CCDC168Q8NDH2 2452 aa13.15□□□□□ -0.3
CPSF1-208ENST00000532560 TRAV27A0A087WT01 109 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 A0A096LPE4 126 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 A0A1W2PPZ6 126 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 SH3PXD2BA1X283 911 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 M0R1B8 84 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 ABCD4O14678 606 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 GADD45GO95257 159 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 STAMBPO95630 424 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 CD40P25942 277 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 OMPP47874 163 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 HSPA13P48723 471 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 TRAP1Q12931 704 aaKnown RBP13.14□□□□□ -0.31
CPSF1-208ENST00000532560 LAPTM4AQ15012 233 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 TESK1Q15569 626 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms