RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 GPR139Q6DWJ6 353 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 ACSM5Q6NUN0 579 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 SLC27A4Q6P1M0 643 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 IZUMO2Q6UXV1 221 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 ZNF620Q6ZNG0 422 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 NANOGNBQ7Z5D8 188 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 GALNT5Q7Z7M9 940 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 ADGRE4PQ86SQ3 457 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 MEX3DQ86XN8 651 aaKnown RBP6.59□□□□□ -1.35
CD44-228ENST00000528455 KIF18BQ86Y91 864 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 UBQLNLQ8IYU4 475 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 TMEM99Q8N816 258 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 LRRC75AQ8NAA5 344 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 OR2T33Q8NG76 320 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 OR52L1Q8NGH7 329 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 TEX47Q8TBZ9 253 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 SMPDL3BQ92485 455 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 FAM168AQ92567 244 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 GPX7Q96SL4 187 aaPredicted RBP6.59□□□□□ -1.35
CD44-228ENST00000528455 MBOAT4Q96T53 435 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 TSSK6Q9BXA6 273 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 TXNIPQ9H3M7 391 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 Q9H521 79 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 EGLN3Q9H6Z9 239 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 TMEM185BQ9H7F4 350 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 SLC25A19Q9HC21 320 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 MCCC2Q9HCC0 563 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 GLRX2Q9NS18 164 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 ASF1BQ9NVP2 202 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 SPRR3Q9UBC9 169 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 ZNF835Q9Y2P0 537 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 ZNF175Q9Y473 711 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 LIPGQ9Y5X9 500 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 UTP20O75691 2785 aaKnown RBP6.59□□□□□ -1.35
CD44-228ENST00000528455 ESPL1Q14674 2120 aa6.59□□□□□ -1.35
CD44-228ENST00000528455 DOPEY2Q9Y3R5 2298 aa6.59□□□□□ -1.36
CD44-228ENST00000528455 PTPN13Q12923 2485 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 TRAV27A0A087WT01 109 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 A0A1W2PNV4 684 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 A0A1W2PRG6 482 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 CLEC18AA5D8T8 446 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 ZNF503-AS2A6NEH8 195 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 CD8B2A6NJW9 211 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 NPIPA2E9PIF3 369 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 NPIPA3F8WFD2 350 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 H0YC42 278 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 GPR171O14626 319 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 RNF13O43567 381 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 CXCL13O43927 109 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 MPZL2O60487 215 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 WDR1O75083 606 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 IGFBP1P08833 259 aaPredicted RBP6.58□□□□□ -1.36
CD44-228ENST00000528455 ACADSP16219 412 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 ZNF43P17038 809 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 PTNP21246 168 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 AHCYP23526 432 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 POU1F1P28069 291 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 EPHA2P29317 976 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 GRK5P34947 590 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 GGT2P36268 569 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 RPL4P36578 427 aaKnown RBP6.58□□□□□ -1.36
CD44-228ENST00000528455 CAPGP40121 348 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 UQCRFS1P47985 274 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 TDGF1P3P51864 188 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 SLC16A1P53985 500 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 AQP4P55087 323 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 TPD52P55327 224 aaPredicted RBP6.58□□□□□ -1.36
CD44-228ENST00000528455 CTXN1P60606 82 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 CDC42P60953 191 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 RPL27P61353 136 aaKnown RBP6.58□□□□□ -1.36
CD44-228ENST00000528455 ISL1P61371 349 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 CSNK2BP67870 215 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 MYBPC1Q00872 1141 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 SRYQ05066 204 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 RBPJQ06330 500 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 RPL18Q07020 188 aaKnown RBP6.58□□□□□ -1.36
CD44-228ENST00000528455 RASGEF1BQ0VAM2 473 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 SLC17A1Q14916 467 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 RNPS1Q15287 305 aaKnown RBP6.58□□□□□ -1.36
CD44-228ENST00000528455 PRR30Q53SZ7 412 aaPredicted RBP6.58□□□□□ -1.36
CD44-228ENST00000528455 EEF1A1P5Q5VTE0 462 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 SLX4IPQ5VYV7 408 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 CLEC18BQ6UXF7 455 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 CASP12Q6UXS9 341 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 USP51Q70EK9 711 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 CREB3L2Q70SY1 520 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 FCRLAQ7L513 359 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 CHERPQ8IWX8 916 aaKnown RBP6.58□□□□□ -1.36
CD44-228ENST00000528455 ARIH2OSQ8N7S6 290 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 CLEC18CQ8NCF0 446 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 OR8J1Q8NGP2 316 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 OR13C2Q8NGS9 318 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 MOSPD2Q8NHP6 518 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 RHOXF1Q8NHV9 184 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 FAM57AQ8TBR7 257 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 INTS12Q96CB8 462 aaKnown RBP6.58□□□□□ -1.36
CD44-228ENST00000528455 ADAD1Q96M93 576 aaKnown RBP6.58□□□□□ -1.36
CD44-228ENST00000528455 ZNF570Q96NI8 536 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 SLC38A2Q96QD8 506 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 PITX2Q99697 317 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms