RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	MELK	Q14680	651 aa		18.28	■□□□□ 0.52
CD44-222	ENST00000526025	FAHD1	Q6P587	224 aa		18.28	■□□□□ 0.52
CD44-222	ENST00000526025	AMIGO2	Q86SJ2	522 aa		18.28	■□□□□ 0.52
CD44-222	ENST00000526025	ZDHHC13	Q8IUH4	622 aa		18.28	■□□□□ 0.52
CD44-222	ENST00000526025	ARIH2OS	Q8N7S6	290 aa		18.28	■□□□□ 0.52
CD44-222	ENST00000526025	NOXO1	Q8NFA2	376 aa		18.28	■□□□□ 0.52
CD44-222	ENST00000526025	STMN2	Q93045	179 aa		18.28	■□□□□ 0.52
CD44-222	ENST00000526025	TSPAN32	Q96QS1	320 aa		18.28	■□□□□ 0.52
CD44-222	ENST00000526025	GRHPR	Q9UBQ7	328 aa		18.28	■□□□□ 0.52
CD44-222	ENST00000526025	ZNF346	Q9UL40	294 aa	Known RBP	18.28	■□□□□ 0.52
CD44-222	ENST00000526025		G3V2T6	193 aa		18.27	■□□□□ 0.52
CD44-222	ENST00000526025	IDH3B	O43837	385 aa		18.27	■□□□□ 0.52
CD44-222	ENST00000526025	TRMU	O75648	421 aa	Known RBP	18.27	■□□□□ 0.52
CD44-222	ENST00000526025	ZNF23	P17027	643 aa		18.27	■□□□□ 0.52
CD44-222	ENST00000526025	IL32	P24001	234 aa		18.27	■□□□□ 0.52
CD44-222	ENST00000526025	SDHA	P31040	664 aa		18.27	■□□□□ 0.52
CD44-222	ENST00000526025	OR7E24	Q6IFN5	339 aa		18.27	■□□□□ 0.52
CD44-222	ENST00000526025	BHLHA15	Q7RTS1	189 aa	Predicted RBP	18.27	■□□□□ 0.52
CD44-222	ENST00000526025	IGFN1	Q86VF2	1251 aa		18.27	■□□□□ 0.52
CD44-222	ENST00000526025	P2RY8	Q86VZ1	359 aa		18.27	■□□□□ 0.52
CD44-222	ENST00000526025	WDFY1	Q8IWB7	410 aa		18.27	■□□□□ 0.52
CD44-222	ENST00000526025	HS3ST5	Q8IZT8	346 aa		18.27	■□□□□ 0.52
CD44-222	ENST00000526025	C17orf78	Q8N4C9	275 aa		18.27	■□□□□ 0.52
CD44-222	ENST00000526025	OR52L1	Q8NGH7	329 aa		18.27	■□□□□ 0.52
CD44-222	ENST00000526025	OR6N1	Q8NGY5	312 aa		18.27	■□□□□ 0.52
CD44-222	ENST00000526025	GTPBP3	Q969Y2	492 aa	Known RBP	18.27	■□□□□ 0.52
CD44-222	ENST00000526025	DACH2	Q96NX9	599 aa		18.27	■□□□□ 0.52
CD44-222	ENST00000526025	ALKBH3	Q96Q83	286 aa	Predicted RBP	18.27	■□□□□ 0.52
CD44-222	ENST00000526025	KCNK17	Q96T54	332 aa		18.27	■□□□□ 0.52
CD44-222	ENST00000526025	NIPSNAP1	Q9BPW8	284 aa		18.27	■□□□□ 0.52
CD44-222	ENST00000526025	SMURF2	Q9HAU4	748 aa		18.27	■□□□□ 0.52
CD44-222	ENST00000526025	GPR35	Q9HC97	309 aa		18.27	■□□□□ 0.52
CD44-222	ENST00000526025	GLTP	Q9NZD2	209 aa		18.27	■□□□□ 0.52
CD44-222	ENST00000526025	NDRG3	Q9UGV2	375 aa		18.27	■□□□□ 0.52
CD44-222	ENST00000526025	TUBAL3	A6NHL2	446 aa		18.26	■□□□□ 0.51
CD44-222	ENST00000526025	ERVK-25	P63136	954 aa		18.26	■□□□□ 0.51
CD44-222	ENST00000526025	ROR2	Q01974	943 aa	Known RBP	18.26	■□□□□ 0.51
CD44-222	ENST00000526025	LGALS3BP	Q08380	585 aa		18.26	■□□□□ 0.51
CD44-222	ENST00000526025	TOP3A	Q13472	1001 aa	Predicted RBP	18.26	■□□□□ 0.51
CD44-222	ENST00000526025	SP5	Q6BEB4	398 aa	Predicted RBP	18.26	■□□□□ 0.51
CD44-222	ENST00000526025	KLHL17	Q6TDP4	642 aa		18.26	■□□□□ 0.51
CD44-222	ENST00000526025	MEX3B	Q6ZN04	569 aa	Known RBP	18.26	■□□□□ 0.51
CD44-222	ENST00000526025	ZNF627	Q7L945	461 aa		18.26	■□□□□ 0.51
CD44-222	ENST00000526025	LINGO2	Q7L985	606 aa		18.26	■□□□□ 0.51
CD44-222	ENST00000526025	ADCK1	Q86TW2	530 aa		18.26	■□□□□ 0.51
CD44-222	ENST00000526025	PARP8	Q8N3A8	854 aa		18.26	■□□□□ 0.51
CD44-222	ENST00000526025	ATG16L2	Q8NAA4	619 aa		18.26	■□□□□ 0.51
CD44-222	ENST00000526025	FAM222B	Q8WU58	562 aa		18.26	■□□□□ 0.51
CD44-222	ENST00000526025	SAMD8	Q96LT4	415 aa		18.26	■□□□□ 0.51
CD44-222	ENST00000526025	ZNF570	Q96NI8	536 aa		18.26	■□□□□ 0.51
CD44-222	ENST00000526025	MUS81	Q96NY9	551 aa		18.26	■□□□□ 0.51
CD44-222	ENST00000526025	PKP2	Q99959	881 aa		18.26	■□□□□ 0.51
CD44-222	ENST00000526025	KCNN3	Q9UGI6	736 aa		18.26	■□□□□ 0.51
CD44-222	ENST00000526025	BAIAP2	Q9UQB8	552 aa		18.26	■□□□□ 0.51
CD44-222	ENST00000526025	ADAM18	Q9Y3Q7	739 aa		18.26	■□□□□ 0.51
CD44-222	ENST00000526025	TP53	P04637	393 aa	Predicted RBP	18.25	■□□□□ 0.51
CD44-222	ENST00000526025	ACVR1B	P36896	505 aa		18.25	■□□□□ 0.51
CD44-222	ENST00000526025	KIR2DL3	P43628	341 aa		18.25	■□□□□ 0.51
CD44-222	ENST00000526025	CLRN1	P58418	232 aa		18.25	■□□□□ 0.51
CD44-222	ENST00000526025	RUNX1T1	Q06455	604 aa		18.25	■□□□□ 0.51
CD44-222	ENST00000526025	PHYHD1	Q5SRE7	291 aa		18.25	■□□□□ 0.51
CD44-222	ENST00000526025	CARD17	Q5XLA6	110 aa		18.25	■□□□□ 0.51
CD44-222	ENST00000526025	PQLC1	Q8N2U9	271 aa		18.25	■□□□□ 0.51
CD44-222	ENST00000526025	MAGEE2	Q8TD90	523 aa	Predicted RBP	18.25	■□□□□ 0.51
CD44-222	ENST00000526025	HDAC2	Q92769	488 aa	Known RBP	18.25	■□□□□ 0.51
CD44-222	ENST00000526025	NMD3	Q96D46	503 aa	Known RBP	18.25	■□□□□ 0.51
CD44-222	ENST00000526025		Q96M85	177 aa		18.25	■□□□□ 0.51
CD44-222	ENST00000526025	SNX18	Q96RF0	628 aa		18.25	■□□□□ 0.51
CD44-222	ENST00000526025	ULBP2	Q9BZM5	246 aa		18.25	■□□□□ 0.51
CD44-222	ENST00000526025	ACTR6	Q9GZN1	396 aa		18.25	■□□□□ 0.51
CD44-222	ENST00000526025	EGLN3	Q9H6Z9	239 aa		18.25	■□□□□ 0.51
CD44-222	ENST00000526025	CRLF2	Q9HC73	371 aa		18.25	■□□□□ 0.51
CD44-222	ENST00000526025	KIF17	Q9P2E2	1029 aa		18.25	■□□□□ 0.51
CD44-222	ENST00000526025	REV1	Q9UBZ9	1251 aa		18.25	■□□□□ 0.51
CD44-222	ENST00000526025	POFUT2	Q9Y2G5	429 aa		18.25	■□□□□ 0.51
CD44-222	ENST00000526025	MAGED1	Q9Y5V3	778 aa	Predicted RBP	18.25	■□□□□ 0.51
CD44-222	ENST00000526025	ZNF99	A8MXY4	864 aa	Predicted RBP	18.24	■□□□□ 0.51
CD44-222	ENST00000526025	ANKRD65	E5RJM6	399 aa		18.24	■□□□□ 0.51
CD44-222	ENST00000526025		M0R3G1	203 aa		18.24	■□□□□ 0.51
CD44-222	ENST00000526025	BHLHE40	O14503	412 aa		18.24	■□□□□ 0.51
CD44-222	ENST00000526025	XKRY	O14609	159 aa		18.24	■□□□□ 0.51
CD44-222	ENST00000526025	LYZL6	O75951	148 aa		18.24	■□□□□ 0.51
CD44-222	ENST00000526025	GOSR1	O95249	250 aa		18.24	■□□□□ 0.51
CD44-222	ENST00000526025	OSM	P13725	252 aa		18.24	■□□□□ 0.51
CD44-222	ENST00000526025	HOXB1	P14653	301 aa	Predicted RBP	18.24	■□□□□ 0.51
CD44-222	ENST00000526025	COX6B1	P14854	86 aa		18.24	■□□□□ 0.51
CD44-222	ENST00000526025	PRKACG	P22612	351 aa		18.24	■□□□□ 0.51
CD44-222	ENST00000526025	PAX7	P23759	505 aa		18.24	■□□□□ 0.51
CD44-222	ENST00000526025	KRR1	Q13601	381 aa	Known RBP	18.24	■□□□□ 0.51
CD44-222	ENST00000526025	GABRA6	Q16445	453 aa		18.24	■□□□□ 0.51
CD44-222	ENST00000526025	NRN1L	Q496H8	165 aa		18.24	■□□□□ 0.51
CD44-222	ENST00000526025	TIMM23B	Q5SRD1	257 aa		18.24	■□□□□ 0.51
CD44-222	ENST00000526025	THEM4	Q5T1C6	240 aa		18.24	■□□□□ 0.51
CD44-222	ENST00000526025	C10orf128	Q5T292	105 aa		18.24	■□□□□ 0.51
CD44-222	ENST00000526025	LRFN4	Q6PJG9	635 aa		18.24	■□□□□ 0.51
CD44-222	ENST00000526025	HSD17B8	Q92506	261 aa		18.24	■□□□□ 0.51
CD44-222	ENST00000526025	S100PBP	Q96BU1	408 aa		18.24	■□□□□ 0.51
CD44-222	ENST00000526025	IFT27	Q9BW83	186 aa		18.24	■□□□□ 0.51
CD44-222	ENST00000526025	PLA2G12A	Q9BZM1	189 aa		18.24	■□□□□ 0.51
CD44-222	ENST00000526025	SEMA6A	Q9H2E6	1030 aa		18.24	■□□□□ 0.51

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