RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 GPR139Q6DWJ6 353 aa13.22□□□□□ -0.29
NUP54-213ENST00000513352 ZNF474Q6S9Z5 364 aaPredicted RBP13.22□□□□□ -0.29
NUP54-213ENST00000513352 NHLRC1Q6VVB1 395 aa13.22□□□□□ -0.29
NUP54-213ENST00000513352 TMEM123Q8N131 208 aa13.22□□□□□ -0.29
NUP54-213ENST00000513352 IQCF1Q8N6M8 205 aa13.22□□□□□ -0.29
NUP54-213ENST00000513352 ARIH2OSQ8N7S6 290 aa13.22□□□□□ -0.29
NUP54-213ENST00000513352 OR2T33Q8NG76 320 aa13.22□□□□□ -0.29
NUP54-213ENST00000513352 ULBP2Q9BZM5 246 aa13.22□□□□□ -0.29
NUP54-213ENST00000513352 RIBC2Q9H4K1 309 aa13.22□□□□□ -0.29
NUP54-213ENST00000513352 RNPEPL1Q9HAU8 725 aa13.22□□□□□ -0.29
NUP54-213ENST00000513352 NRIP3Q9NQ35 241 aa13.22□□□□□ -0.29
NUP54-213ENST00000513352 ASB6Q9NWX5 421 aa13.22□□□□□ -0.29
NUP54-213ENST00000513352 GALNT8Q9NY28 637 aa13.22□□□□□ -0.29
NUP54-213ENST00000513352 IL20Q9NYY1 176 aa13.22□□□□□ -0.29
NUP54-213ENST00000513352 NKX1-2Q9UD57 310 aaPredicted RBP13.22□□□□□ -0.29
NUP54-213ENST00000513352 RELNP78509 3460 aa13.22□□□□□ -0.29
NUP54-213ENST00000513352 A1L4Q6 167 aa13.21□□□□□ -0.29
NUP54-213ENST00000513352 TP53P04637 393 aaPredicted RBP13.21□□□□□ -0.29
NUP54-213ENST00000513352 PEX2P28328 305 aa13.21□□□□□ -0.29
NUP54-213ENST00000513352 ALDH3A2P51648 485 aa13.21□□□□□ -0.29
NUP54-213ENST00000513352 PPP2R2BQ00005 443 aa13.21□□□□□ -0.29
NUP54-213ENST00000513352 ROR2Q01974 943 aaKnown RBP13.21□□□□□ -0.29
NUP54-213ENST00000513352 PGGHGQ32M88 737 aa13.21□□□□□ -0.29
NUP54-213ENST00000513352 MESTQ5EB52 335 aa13.21□□□□□ -0.29
NUP54-213ENST00000513352 ARMC4Q5T2S8 1044 aa13.21□□□□□ -0.29
NUP54-213ENST00000513352 Q6ZT83 130 aa13.21□□□□□ -0.29
NUP54-213ENST00000513352 FAM122BQ7Z309 247 aa13.21□□□□□ -0.29
NUP54-213ENST00000513352 CXorf67Q86X51 503 aaPredicted RBP13.21□□□□□ -0.29
NUP54-213ENST00000513352 C20orf196Q8IYI0 205 aa13.21□□□□□ -0.29
NUP54-213ENST00000513352 ZNF519Q8TB69 540 aa13.21□□□□□ -0.29
NUP54-213ENST00000513352 HDAC2Q92769 488 aaKnown RBP13.21□□□□□ -0.29
NUP54-213ENST00000513352 RNASE6Q93091 150 aaKnown RBP13.21□□□□□ -0.29
NUP54-213ENST00000513352 OSBPL10Q9BXB5 764 aa13.21□□□□□ -0.29
NUP54-213ENST00000513352 LINC00470Q9BZP3 86 aa13.21□□□□□ -0.29
NUP54-213ENST00000513352 GLTPQ9NZD2 209 aa13.21□□□□□ -0.29
NUP54-213ENST00000513352 JKAMPQ9P055 326 aa13.21□□□□□ -0.29
NUP54-213ENST00000513352 ENOPH1Q9UHY7 261 aa13.21□□□□□ -0.29
NUP54-213ENST00000513352 TMEFF2Q9UIK5 374 aaPredicted RBP13.21□□□□□ -0.29
NUP54-213ENST00000513352 BAIAP2Q9UQB8 552 aa13.21□□□□□ -0.29
NUP54-213ENST00000513352 FLNCQ14315 2725 aa13.21□□□□□ -0.29
NUP54-213ENST00000513352 USP9XQ93008 2570 aaPredicted RBP13.2□□□□□ -0.3
NUP54-213ENST00000513352 CIB4A0PJX0 185 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 WIPF3A6NGB9 483 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 IDH3BO43837 385 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 LYZL6O75951 148 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 RENP00797 406 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 PGA4P0DJD7 388 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 PGA3P0DJD8 388 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 APEHP13798 732 aaKnown RBP13.2□□□□□ -0.3
NUP54-213ENST00000513352 IL32P24001 234 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 CD79BP40259 229 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 CRISP1P54107 249 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 RAD23AP54725 363 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 ESRRGP62508 458 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 SLC34A1Q06495 639 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 ITGADQ13349 1161 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 GINS1Q14691 196 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 TSC22D1Q15714 1073 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 PHYHD1Q5SRE7 291 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 SLC27A4Q6P1M0 643 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 LEG1Q6P5S2 330 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 PARP8Q8N3A8 854 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 GALNT4Q8N4A0 578 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 SDR9C7Q8NEX9 313 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 OR4Q3Q8NH05 313 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 OR4K13Q8NH42 304 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 KISS1RQ969F8 398 aaPredicted RBP13.2□□□□□ -0.3
NUP54-213ENST00000513352 LRR1Q96L50 414 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 TEX12Q9BXU0 123 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 RERGLQ9H628 205 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 CRLF2Q9HC73 371 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 GPR35Q9HC97 309 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 ELOVL5Q9NYP7 299 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 USE1Q9NZ43 259 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 MALT1Q9UDY8 824 aa13.2□□□□□ -0.3
NUP54-213ENST00000513352 HELZ2Q9BYK8 2649 aaKnown RBP13.19□□□□□ -0.3
NUP54-213ENST00000513352 HCFC1P51610 2035 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 CLEC18AA5D8T8 446 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 RIIAD1A6NNX1 92 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 PRSS44E7EML9 344 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 BHLHE40O14503 412 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 ARPC3O15145 178 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 CNOT4O95628 575 aaKnown RBP13.19□□□□□ -0.3
NUP54-213ENST00000513352 ATP6V1G2O95670 118 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 ALPLP05186 524 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 QDPRP09417 244 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 NR2C1P13056 603 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 HIST1H1CP16403 213 aaKnown RBP13.19□□□□□ -0.3
NUP54-213ENST00000513352 IGHV1-2P23083 117 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 GRNP28799 593 aaKnown RBP13.19□□□□□ -0.3
NUP54-213ENST00000513352 MPGP29372 298 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 GRK5P34947 590 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 FOXG1P55316 489 aaPredicted RBP13.19□□□□□ -0.3
NUP54-213ENST00000513352 FMODQ06828 376 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.19□□□□□ -0.3
NUP54-213ENST00000513352 FAM27E3Q08E93 113 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 CEACAM16Q2WEN9 425 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 ZIK1Q3SY52 487 aaPredicted RBP13.19□□□□□ -0.3
NUP54-213ENST00000513352 TMEM236Q5W0B7 351 aa13.19□□□□□ -0.3
NUP54-213ENST00000513352 CLEC18BQ6UXF7 455 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms