RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 CSPG4P5Q96PW8 444 aa3.63□□□□□ -1.83
VPS13A-212ENST00000493341 ISG20L2Q9H9L3 353 aaKnown RBP3.63□□□□□ -1.83
VPS13A-212ENST00000493341 MOB4Q9Y3A3 225 aa3.63□□□□□ -1.83
VPS13A-212ENST00000493341 AQRO60306 1485 aaKnown RBP eCLIP3.62□□□□□ -1.83
VPS13A-212ENST00000493341 ADAMTS12P58397 1594 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 ERICH3Q5RHP9 1530 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 A0A1B0GU03 582 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 APOA1P02647 267 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 TCN1P20061 433 aaPredicted RBP3.62□□□□□ -1.83
VPS13A-212ENST00000493341 TBPP20226 339 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 KLK7P49862 253 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 ATP12AP54707 1039 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 TNNC1P63316 161 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 MS4A2Q01362 244 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 SF3A2Q15428 464 aaKnown RBP3.62□□□□□ -1.83
VPS13A-212ENST00000493341 LRRC36Q1X8D7 754 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 GPR157Q5UAW9 335 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 ZNF613Q6PF04 617 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 ZNF546Q86UE3 836 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 PDIK1LQ8N165 341 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 SLC39A11Q8N1S5 342 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 ZNF557Q8N988 423 aaPredicted RBP3.62□□□□□ -1.83
VPS13A-212ENST00000493341 HSD17B11Q8NBQ5 300 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 OR56A4Q8NGH8 313 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 OR13C9Q8NGT0 318 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 SMARCD2Q92925 531 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 NAT6Q93015 286 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 NEIL2Q969S2 332 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 SLC25A38Q96DW6 304 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 PRRG3Q9BZD7 231 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 TM6SF2Q9BZW4 377 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 MRPL47Q9HD33 250 aaKnown RBP3.62□□□□□ -1.83
VPS13A-212ENST00000493341 STOX2Q9P2F5 926 aaPredicted RBP3.62□□□□□ -1.83
VPS13A-212ENST00000493341 SNAPC4Q5SXM2 1469 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 ARHGEF11O15085 1522 aa3.62□□□□□ -1.83
VPS13A-212ENST00000493341 A0A1W2PRD5 423 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 K7N7A8 449 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 PHF1O43189 567 aaPredicted RBP3.61□□□□□ -1.83
VPS13A-212ENST00000493341 HSBP1O75506 76 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 DUSP14O95147 198 aaKnown RBP3.61□□□□□ -1.83
VPS13A-212ENST00000493341 CCDC166P0CW27 439 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 GABRR2P28476 465 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 AQP1P29972 269 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 UGT1A3P35503 534 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 CFHR2P36980 270 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 GPR1P46091 355 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 GPR4P46093 362 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 CCNG1P51959 295 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 YWHAEP62258 255 aaKnown RBP3.61□□□□□ -1.83
VPS13A-212ENST00000493341 SELENOTP62341 195 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 IRX1P78414 480 aaPredicted RBP3.61□□□□□ -1.83
VPS13A-212ENST00000493341 ULK3Q6PHR2 472 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 BHLHA9Q7RTU4 235 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 FAM122BQ7Z309 247 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 HDDC2Q7Z4H3 204 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 SLC25A42Q86VD7 318 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 PPP1R27Q86WC6 154 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 SKA3Q8IX90 412 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 Q8N377 158 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 NDNFQ8TB73 568 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 CHCHD10Q8WYQ3 142 aaPredicted RBP3.61□□□□□ -1.83
VPS13A-212ENST00000493341 ITCHQ96J02 903 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 C9orf72Q96LT7 481 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 LINC00479Q96M42 142 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 RANBP9Q96S59 729 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 TRIM51Q9BSJ1 452 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 GNB4Q9HAV0 340 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 TREM1Q9NP99 234 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 CCDC59Q9P031 241 aaKnown RBP3.61□□□□□ -1.83
VPS13A-212ENST00000493341 GAPVD1Q14C86 1478 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 SHROOM2Q13796 1616 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 WRNQ14191 1432 aaPredicted RBP eCLIP3.61□□□□□ -1.83
VPS13A-212ENST00000493341 KIR2DL5BA0A0G2JN68 375 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 KIR2DL5BA0A0G2JPC4 375 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 A0A1B0GW55 424 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 KDELR3O43731 214 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 MGRN1O60291 552 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 DUX4L2P0CJ85 424 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 DUX4L3P0CJ86 424 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 DUX4L4P0CJ87 422 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 DUX4L5P0CJ88 424 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 DUX4L6P0CJ89 424 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 DUX4L7P0CJ90 424 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 SSR4P51571 173 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 SLC25A1P53007 311 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 RPS15AP62244 130 aaKnown RBP3.61□□□□□ -1.83
VPS13A-212ENST00000493341 IRX3P78415 501 aaPredicted RBP3.61□□□□□ -1.83
VPS13A-212ENST00000493341 ZNF33AQ06730 810 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 GPR176Q14439 515 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 KRT71Q3SY84 523 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 METTL11BQ5VVY1 283 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 RUSC1-AS1Q66K80 236 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 CNIH2Q6PI25 160 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 DEGS2Q6QHC5 323 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 DUX4L9Q6RFH8 374 aaPredicted RBP3.61□□□□□ -1.83
VPS13A-212ENST00000493341 SPESP1Q6UW49 350 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 C2orf66Q6UXQ4 117 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 C17orf82Q86X59 251 aaPredicted RBP3.61□□□□□ -1.83
VPS13A-212ENST00000493341 KIR2DL5AQ8N109 375 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 TRAM1L1Q8N609 369 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms