RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 XRCC3O43542 346 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 LDB3O75112 727 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 HPRP00739 348 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 TIMP1P01033 207 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 PDYNP01213 254 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 HLA-AP01891 365 aaKnown RBP3.77□□□□□ -1.81
BRCA1-220ENST00000492859 HPXP02790 462 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 P04436 131 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 BPGMP07738 259 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 GP9P14770 177 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 HIST1H1CP16403 213 aaKnown RBP3.77□□□□□ -1.81
BRCA1-220ENST00000492859 ENGP17813 658 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 CELP19835 753 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 C4BPBP20851 252 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 RPS12P25398 132 aaKnown RBP3.77□□□□□ -1.81
BRCA1-220ENST00000492859 RPL10P27635 214 aaKnown RBP3.77□□□□□ -1.81
BRCA1-220ENST00000492859 SRD5A2P31213 254 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 CCKARP32238 428 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 DNASE1L1P49184 302 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 CDKN2DP55273 166 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 OR2B8PP59922 312 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 MAXP61244 160 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 PAX2Q02962 417 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 MVKQ03426 396 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 CD47Q08722 323 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 CNTN1Q12860 1018 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 HNRNPA0Q13151 305 aaKnown RBP3.77□□□□□ -1.81
BRCA1-220ENST00000492859 NME3Q13232 169 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 BIKQ13323 160 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 ABRAXAS2Q15018 415 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 OR1Q1Q15612 314 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 ZNF77Q15935 545 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 CDKN3Q16667 212 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 EIPR1Q53HC9 387 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 C6orf141Q5SZD1 244 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 TYW3Q6IPR3 259 aaKnown RBP3.77□□□□□ -1.81
BRCA1-220ENST00000492859 MFSD12Q6NUT3 480 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 SSX6Q7RTT6 188 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 ATG4DQ86TL0 474 aaPredicted RBP3.77□□□□□ -1.81
BRCA1-220ENST00000492859 NOXA1Q86UR1 476 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 CARM1Q86X55 608 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 APOBEC3FQ8IUX4 373 aaKnown RBP3.77□□□□□ -1.81
BRCA1-220ENST00000492859 CTAGE3PQ8IX95 158 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 Q8N9G6 341 aaPredicted RBP3.77□□□□□ -1.81
BRCA1-220ENST00000492859 OR52N4Q8NGI2 321 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 OR6M1Q8NGM8 313 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 OR2AJ1Q8NGZ0 328 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 OR1P1Q8NH06 330 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 SPATA22Q8NHS9 363 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 OR5P2Q8WZ92 322 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 RGP1Q92546 391 aaPredicted RBP3.77□□□□□ -1.81
BRCA1-220ENST00000492859 TM4SF18Q96CE8 201 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 CTHRC1Q96CG8 243 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 OR5B12Q96R08 314 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 OR8B4Q96RC9 309 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 TRIM51Q9BSJ1 452 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 C16orf70Q9BSU1 422 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 PDCD10Q9BUL8 212 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 ARL6Q9H0F7 186 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 CDH20Q9HBT6 801 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 SSU72Q9NP77 194 aaKnown RBP3.77□□□□□ -1.81
BRCA1-220ENST00000492859 SPAG4Q9NPE6 437 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 IL17RBQ9NRM6 502 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 GPATCH2LQ9NWQ4 482 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 B3GNT2Q9NY97 397 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 SLC25A13Q9UJS0 675 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 GNG8Q9UK08 70 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 FBXO5Q9UKT4 447 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 C14orf166Q9Y224 244 aaKnown RBP3.77□□□□□ -1.81
BRCA1-220ENST00000492859 B3GALT5Q9Y2C3 310 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 TMED7Q9Y3B3 224 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 MYO5BQ9ULV0 1848 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 NCANO14594 1321 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 FAM135AQ9P2D6 1515 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 CASZ1Q86V15 1759 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 CD109Q6YHK3 1445 aa3.77□□□□□ -1.81
BRCA1-220ENST00000492859 TRAV8-7A0A075B6U6 113 aa3.76□□□□□ -1.81
BRCA1-220ENST00000492859 TRBV9A0A0B4J1U6 114 aa3.76□□□□□ -1.81
BRCA1-220ENST00000492859 A0A0X1KG70 313 aa3.76□□□□□ -1.81
BRCA1-220ENST00000492859 IGSF23A1L1A6 192 aa3.76□□□□□ -1.81
BRCA1-220ENST00000492859 LRP5LA4QPB2 252 aa3.76□□□□□ -1.81
BRCA1-220ENST00000492859 LRRC30A6NM36 301 aa3.76□□□□□ -1.81
BRCA1-220ENST00000492859 ZNF878C9JN71 531 aa3.76□□□□□ -1.81
BRCA1-220ENST00000492859 KCNK1O00180 336 aa3.76□□□□□ -1.81
BRCA1-220ENST00000492859 PLPP3O14495 311 aa3.76□□□□□ -1.81
BRCA1-220ENST00000492859 PLPP2O43688 288 aa3.76□□□□□ -1.81
BRCA1-220ENST00000492859 MPZL2O60487 215 aa3.76□□□□□ -1.81
BRCA1-220ENST00000492859 EIF4EBP3O60516 100 aaPredicted RBP3.76□□□□□ -1.81
BRCA1-220ENST00000492859 CDC14BO60729 498 aa3.76□□□□□ -1.81
BRCA1-220ENST00000492859 CA11O75493 328 aa3.76□□□□□ -1.81
BRCA1-220ENST00000492859 SLC22A5O76082 557 aa3.76□□□□□ -1.81
BRCA1-220ENST00000492859 NDUFA10O95299 355 aa3.76□□□□□ -1.81
BRCA1-220ENST00000492859 CD160O95971 181 aa3.76□□□□□ -1.81
BRCA1-220ENST00000492859 C1QBP02746 253 aa3.76□□□□□ -1.81
BRCA1-220ENST00000492859 THY1P04216 161 aa3.76□□□□□ -1.81
BRCA1-220ENST00000492859 ARG1P05089 322 aa3.76□□□□□ -1.81
BRCA1-220ENST00000492859 UGT2B7P16662 529 aa3.76□□□□□ -1.81
BRCA1-220ENST00000492859 F2RP25116 425 aa3.76□□□□□ -1.81
BRCA1-220ENST00000492859 PRDX3P30048 256 aaKnown RBP3.76□□□□□ -1.81
BRCA1-220ENST00000492859 EFNB2P52799 333 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms