RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 FREM1Q5H8C1 2179 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 TRAV27A0A087WT01 109 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.08□□□□□ -1.28
USP40-216ENST00000485943 A0A1W2PR80 420 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 OR5H1A6NKK0 313 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 ZNF814B7Z6K7 855 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 TNFRSF11BO00300 401 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 WIPF1O43516 503 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 PIP5K1CO60331 668 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 NPIPB7O75200 414 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 CTAG2O75638 210 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 KRT36O76013 467 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 CCNB2O95067 398 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 CST1P01037 141 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 CRYAAP02489 173 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 RAF1P04049 648 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 PTAFRP25105 342 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 ACVR1BP36896 505 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 RPS6KA3P51812 740 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 CTXN1P60606 82 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 PLP2Q04941 152 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 DAZAP2Q15038 168 aaPredicted RBP7.08□□□□□ -1.28
USP40-216ENST00000485943 GUSBP1Q15486 140 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 TAB1Q15750 504 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 CEACAM16Q2WEN9 425 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 FAM205BPQ63HN1 556 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 C8orf82Q6P1X6 216 aaPredicted RBP7.08□□□□□ -1.28
USP40-216ENST00000485943 TMEM53Q6P2H8 277 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 ANKRD16Q6P6B7 361 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 MBOAT2Q6ZWT7 520 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 C10orf67Q8IYJ2 551 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 ZNF433Q8N7K0 673 aaPredicted RBP7.08□□□□□ -1.28
USP40-216ENST00000485943 FANK1Q8TC84 345 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 PIGTQ969N2 578 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 FBXW5Q969U6 566 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 SLC25A44Q96H78 314 aaPredicted RBP7.08□□□□□ -1.28
USP40-216ENST00000485943 FAM46AQ96IP4 442 aaKnown RBP7.08□□□□□ -1.28
USP40-216ENST00000485943 ZNF570Q96NI8 536 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 WFDC6Q9BQY6 131 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 LINC00470Q9BZP3 86 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 LRMDAQ9H2I8 198 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 CXorf56Q9H5V9 222 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 SEC61A2Q9H9S3 476 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 NMNAT1Q9HAN9 279 aaPredicted RBP7.08□□□□□ -1.28
USP40-216ENST00000485943 REV1Q9UBZ9 1251 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 SEC14L4Q9UDX3 406 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 A4GNTQ9UNA3 340 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 HIF3AQ9Y2N7 669 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 SAMHD1Q9Y3Z3 626 aaKnown RBP7.08□□□□□ -1.28
USP40-216ENST00000485943 ATP23Q9Y6H3 246 aa7.08□□□□□ -1.28
USP40-216ENST00000485943 FLNBO75369 2602 aaKnown RBP7.07□□□□□ -1.28
USP40-216ENST00000485943 IGKV1D-42A0A075B6H8 117 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 IQCMA0A1B0GVH7 501 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 A0A1W2PPL8 197 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 DHRS12A0PJE2 317 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 MEGF11A6BM72 1044 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 UNC119BA6NIH7 251 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 ZNF99A8MXY4 864 aaPredicted RBP7.07□□□□□ -1.28
USP40-216ENST00000485943 FTCDNL1E5RQL4 147 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 ABCD4O14678 606 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 ARHGEF9O43307 516 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 SMPD2O60906 423 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 UBL3O95164 117 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 NDUFB2O95178 105 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 RENP00797 406 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 PTHP01270 115 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 ERCC1P07992 297 aaPredicted RBP7.07□□□□□ -1.28
USP40-216ENST00000485943 RAP2AP10114 183 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 IGFBP2P18065 325 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 ATP6V1B2P21281 511 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 SLC6A6P31641 620 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 AQP2P41181 271 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 CDH11P55287 796 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 SELENOVP59797 346 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 CBX1P83916 185 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 MYBPC1Q00872 1141 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 ID3Q02535 119 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 HSF2Q03933 536 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 PRKCDQ05655 676 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 RPL18Q07020 188 aaKnown RBP7.07□□□□□ -1.28
USP40-216ENST00000485943 TRAP1Q12931 704 aaKnown RBP7.07□□□□□ -1.28
USP40-216ENST00000485943 TBRG1Q3YBR2 411 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 SLC36A2Q495M3 483 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 RPL13AP3Q6NVV1 102 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 ADAM5Q6NVV9 412 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 PODNL1Q6PEZ8 512 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 DNM1P34Q6PK57 102 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 UNQ6126/PRO20091Q6UXV3 157 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 ZNF704Q6ZNC4 412 aaPredicted RBP7.07□□□□□ -1.28
USP40-216ENST00000485943 SLC16A14Q7RTX9 510 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 IGFN1Q86VF2 1251 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 EPHX4Q8IUS5 362 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 FBXL14Q8N1E6 418 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 LRRC17Q8N6Y2 441 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 CELF2-AS1Q8N7Q2 184 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 SYT14Q8NB59 555 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 OR6X1Q8NH79 312 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 GNPDA2Q8TDQ7 276 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 NSMAFQ92636 917 aa7.07□□□□□ -1.28
USP40-216ENST00000485943 TRMT61AQ96FX7 289 aaKnown RBP7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms