RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 NMNAT3Q96T66 252 aa9.05□□□□□ -0.96
USP39-215ENST00000481409 TEAD3Q99594 435 aa9.05□□□□□ -0.96
USP39-215ENST00000481409 TM9SF2Q99805 663 aa9.05□□□□□ -0.96
USP39-215ENST00000481409 TUBA1CQ9BQE3 449 aa9.05□□□□□ -0.96
USP39-215ENST00000481409 JAM3Q9BX67 310 aa9.05□□□□□ -0.96
USP39-215ENST00000481409 LINC00470Q9BZP3 86 aa9.05□□□□□ -0.96
USP39-215ENST00000481409 B3GAT2Q9NPZ5 323 aa9.05□□□□□ -0.96
USP39-215ENST00000481409 INPP5EQ9NRR6 644 aa9.05□□□□□ -0.96
USP39-215ENST00000481409 FKBP14Q9NWM8 211 aa9.05□□□□□ -0.96
USP39-215ENST00000481409 ASB6Q9NWX5 421 aa9.05□□□□□ -0.96
USP39-215ENST00000481409 CLCF1Q9UBD9 225 aa9.05□□□□□ -0.96
USP39-215ENST00000481409 FLVCR1Q9Y5Y0 555 aa9.05□□□□□ -0.96
USP39-215ENST00000481409 NCOR2Q9Y618 2525 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 SLC22A23A1A5C7 686 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 SLC35F4A4IF30 521 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 OR6C68A6NDL8 312 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 ZNF814B7Z6K7 855 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 H0YC42 278 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 PRRG2O14669 202 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 GLCEO94923 617 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 CNOT4O95628 575 aaKnown RBP9.04□□□□□ -0.96
USP39-215ENST00000481409 FADS2O95864 444 aaKnown RBP9.04□□□□□ -0.96
USP39-215ENST00000481409 PLGP00747 810 aaPredicted RBP9.04□□□□□ -0.96
USP39-215ENST00000481409 HRGP04196 525 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 PGA4P0DJD7 388 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 PGA3P0DJD8 388 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 DBTP11182 482 aaKnown RBP9.04□□□□□ -0.96
USP39-215ENST00000481409 SPI1P17947 270 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 CLRN1P58418 232 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 MVKQ03426 396 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 GLO1Q04760 184 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 ZNF91Q05481 1191 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 NRN1LQ496H8 165 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 LAIR2Q6ISS4 152 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 PRSS48Q7RTY5 328 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 P4HA3Q7Z4N8 544 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 ABHD12BQ7Z5M8 362 aaPredicted RBP9.04□□□□□ -0.96
USP39-215ENST00000481409 SVOPQ8N4V2 548 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 CISD2Q8N5K1 135 aaKnown RBP9.04□□□□□ -0.96
USP39-215ENST00000481409 NOXO1Q8NFA2 376 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 TMEM54Q969K7 222 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 SNRNP40Q96DI7 357 aaKnown RBP9.04□□□□□ -0.96
USP39-215ENST00000481409 DNAJA3Q96EY1 480 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 MRPL48Q96GC5 212 aaKnown RBP9.04□□□□□ -0.96
USP39-215ENST00000481409 ZNF845Q96IR2 970 aaPredicted RBP9.04□□□□□ -0.96
USP39-215ENST00000481409 WACQ9BTA9 647 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 TP63Q9H3D4 680 aaPredicted RBP9.04□□□□□ -0.96
USP39-215ENST00000481409 VCX3AQ9NNX9 186 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 FGF20Q9NP95 211 aaPredicted RBP9.04□□□□□ -0.96
USP39-215ENST00000481409 SCOCQ9UIL1 159 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 KCNG2Q9UJ96 466 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 EXOGQ9Y2C4 368 aaKnown RBP9.04□□□□□ -0.96
USP39-215ENST00000481409 ZNF835Q9Y2P0 537 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 GPR52Q9Y2T5 361 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 NOSIPQ9Y314 301 aaKnown RBP9.04□□□□□ -0.96
USP39-215ENST00000481409 BOLA1Q9Y3E2 137 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 PCDHGB5Q9Y5G0 923 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 DNAJC13O75165 2243 aa9.04□□□□□ -0.96
USP39-215ENST00000481409 ASPMQ8IZT6 3477 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 DMXL2Q8TDJ6 3036 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 ZNF407Q9C0G0 2248 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 MBD3L4A6NDZ8 208 aaPredicted RBP9.03□□□□□ -0.96
USP39-215ENST00000481409 MBD3L3A6NE82 208 aaPredicted RBP9.03□□□□□ -0.96
USP39-215ENST00000481409 MBD3L5A6NJ08 208 aaPredicted RBP9.03□□□□□ -0.96
USP39-215ENST00000481409 TRIM64CA6NLI5 447 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 PHYHO14832 338 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 RGS10O43665 173 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 SS18L1O75177 396 aaPredicted RBP9.03□□□□□ -0.96
USP39-215ENST00000481409 MRPL33O75394 65 aaKnown RBP9.03□□□□□ -0.96
USP39-215ENST00000481409 KHDRBS3O75525 346 aaKnown RBP9.03□□□□□ -0.96
USP39-215ENST00000481409 SERPINI2O75830 405 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 SLC2A10O95528 541 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 RAB36O95755 333 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 CDK1P06493 297 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 ABOP16442 354 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 EEF1B2P24534 225 aaKnown RBP9.03□□□□□ -0.96
USP39-215ENST00000481409 FMO3P31513 532 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 TIMP3P35625 211 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 GUCA1AP43080 201 aaPredicted RBP9.03□□□□□ -0.96
USP39-215ENST00000481409 CSNK1A1P48729 337 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 CLDN17P56750 224 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 ACTC1P68032 377 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 ACTA1P68133 377 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 HSF2Q03933 536 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 APOFQ13790 326 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 MELKQ14680 651 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 ACSF3Q4G176 576 aaPredicted RBP9.03□□□□□ -0.96
USP39-215ENST00000481409 C10orf128Q5T292 105 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 ZNF773Q6PK81 442 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 AAED1Q7RTV5 226 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 C20orf196Q8IYI0 205 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 TMEM123Q8N131 208 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 KDM8Q8N371 416 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 STX19Q8N4C7 294 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 ZIC4Q8N9L1 334 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 TSPAN14Q8NG11 270 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 MBD3L2Q8NHZ7 208 aaPredicted RBP9.03□□□□□ -0.96
USP39-215ENST00000481409 FNDC9Q8TBE3 224 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 HAVCR2Q8TDQ0 301 aa9.03□□□□□ -0.96
USP39-215ENST00000481409 ROBO4Q8WZ75 1007 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms