RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 TNFAIP6P98066 277 aaPredicted RBP3.89□□□□□ -1.79
USP4-209ENST00000475873 DGCR2P98153 550 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 RBBP4Q09028 425 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 MGAT5Q09328 741 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 C2orf80Q0P641 193 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 PMS2P3Q13401 168 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 FRG1Q14331 258 aaKnown RBP3.89□□□□□ -1.79
USP4-209ENST00000475873 LASP1Q14847 261 aaKnown RBP3.89□□□□□ -1.79
USP4-209ENST00000475873 MFSD13AQ14CX5 517 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 TAF11Q15544 211 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 ZNF141Q15928 474 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 LY6EQ16553 131 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 RUNDC3AQ59EK9 446 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 TTMPQ5BVD1 217 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 AP1ARQ63HQ0 302 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 ZNF813Q6ZN06 617 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 OVCH2Q7RTZ1 564 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 SZRD1Q7Z422 152 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 HMGN2P46Q86SG4 172 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 SKA3Q8IX90 412 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 CCDC36Q8IYA8 594 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 SCAIQ8N9R8 606 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 SCCPDHQ8NBX0 429 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 ICA1LQ8NDH6 482 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 SLC30A7Q8NEW0 376 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 CDC26Q8NHZ8 85 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 ITLN1Q8WWA0 313 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 TMEM234Q8WY98 164 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 C11orf40Q8WZ69 217 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 RORBQ92753 470 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 ARL8AQ96BM9 186 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 ISOC1Q96CN7 298 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 FAM120BQ96EK7 910 aaKnown RBP3.89□□□□□ -1.79
USP4-209ENST00000475873 NEIL1Q96FI4 390 aaPredicted RBP3.89□□□□□ -1.79
USP4-209ENST00000475873 EGLN2Q96KS0 407 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 OR2M2Q96R28 347 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 OR5M11Q96RB7 305 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 MYLK2Q9H1R3 596 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 PIGUQ9H490 435 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 ELOVL6Q9H5J4 265 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 RANBP3Q9H6Z4 567 aaPredicted RBP3.89□□□□□ -1.79
USP4-209ENST00000475873 SMURF1Q9HCE7 757 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 DUSP22Q9NRW4 184 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 C20orf141Q9NUB4 165 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 GPR160Q9UJ42 338 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 MAB21L2Q9Y586 359 aa3.89□□□□□ -1.79
USP4-209ENST00000475873 SPIN1Q9Y657 262 aaPredicted RBP3.89□□□□□ -1.79
USP4-209ENST00000475873 BTBD17A6NE02 478 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 FTCDNL1E5RQL4 147 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 M0R3G1 203 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 MANBAO00462 879 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 PHYHO14832 338 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 ANKRD28O15084 1053 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 TP73O15350 636 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 ZNF208O43345 1280 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 OR4F21O95013 312 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 SNAP29O95721 258 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 CYB5R3P00387 301 aaPredicted RBP3.88□□□□□ -1.79
USP4-209ENST00000475873 FGGP02679 453 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 FBP1P09467 338 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 ANXA4P09525 319 aaPredicted RBP3.88□□□□□ -1.79
USP4-209ENST00000475873 OR12D1P0DN82 309 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 MED14OSP0DP75 135 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 GFAPP14136 432 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 STMN1P16949 149 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 ZNF26P17031 533 aaPredicted RBP3.88□□□□□ -1.79
USP4-209ENST00000475873 ATP6V1C1P21283 382 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 TACR3P29371 465 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 PSMB10P40306 273 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 ARL1P40616 181 aaPredicted RBP3.88□□□□□ -1.79
USP4-209ENST00000475873 PMELP40967 661 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 SLC12A2P55011 1212 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 CDH13P55290 713 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 SELENOVP59797 346 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 ARF6P62330 175 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 BNIP2Q12982 314 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 KLRD1Q13241 179 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 PDE7AQ13946 482 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 SPA17Q15506 151 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 CHI3L2Q15782 390 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 ZNF404Q494X3 552 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 THEM4Q5T1C6 240 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 NOXRED1Q6NXP6 359 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 C10orf99Q6UWK7 81 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 NHLRC1Q6VVB1 395 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 CCDC121Q6ZUS5 278 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 RFPL4BQ6ZWI9 263 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 PIWIL3Q7Z3Z3 882 aaKnown RBP3.88□□□□□ -1.79
USP4-209ENST00000475873 ANKMY2Q8IV38 441 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 PPIL6Q8IXY8 311 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 CCDC170Q8IYT3 715 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 FGFRL1Q8N441 504 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 PTGR2Q8N8N7 351 aaPredicted RBP3.88□□□□□ -1.79
USP4-209ENST00000475873 C19orf18Q8NEA5 215 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 OR5R1Q8NH85 324 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 ZNF420Q8TAQ5 688 aaPredicted RBP3.88□□□□□ -1.79
USP4-209ENST00000475873 PIFOQ8TCI5 191 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 KLF14Q8TD94 323 aaPredicted RBP3.88□□□□□ -1.79
USP4-209ENST00000475873 MGARPQ8TDB4 240 aa3.88□□□□□ -1.79
USP4-209ENST00000475873 CLPTM1LQ96KA5 538 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms