RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 ENTPD8Q5MY95 495 aa17.03■□□□□ 0.32
COL9A3-210ENST00000472880 NHLRC1Q6VVB1 395 aa17.03■□□□□ 0.32
COL9A3-210ENST00000472880 OR6T1Q8NGN1 323 aa17.03■□□□□ 0.32
COL9A3-210ENST00000472880 VANGL1Q8TAA9 524 aaPredicted RBP17.03■□□□□ 0.32
COL9A3-210ENST00000472880 ZNF75AQ96N20 296 aa17.03■□□□□ 0.32
COL9A3-210ENST00000472880 CGREF1Q99674 301 aa17.03■□□□□ 0.32
COL9A3-210ENST00000472880 ZNF224Q9NZL3 707 aa17.03■□□□□ 0.32
COL9A3-210ENST00000472880 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.02■□□□□ 0.322e-10■■□□□ 12.3
COL9A3-210ENST00000472880 M0QX08 132 aa17.02■□□□□ 0.32
COL9A3-210ENST00000472880 EDF1O60869 148 aaKnown RBP17.02■□□□□ 0.32
COL9A3-210ENST00000472880 LILRA1O75019 489 aa17.02■□□□□ 0.32
COL9A3-210ENST00000472880 ENTPD5O75356 428 aa17.02■□□□□ 0.32
COL9A3-210ENST00000472880 VIMP08670 466 aaKnown RBP17.02■□□□□ 0.32
COL9A3-210ENST00000472880 ZNF35P13682 527 aa17.02■□□□□ 0.32
COL9A3-210ENST00000472880 IL2RGP31785 369 aa17.02■□□□□ 0.32
COL9A3-210ENST00000472880 GLRXP35754 106 aa17.02■□□□□ 0.32
COL9A3-210ENST00000472880 SELPLGQ14242 412 aa17.02■□□□□ 0.32
COL9A3-210ENST00000472880 NPTX1Q15818 432 aa17.02■□□□□ 0.32
COL9A3-210ENST00000472880 DUSP7Q16829 419 aa17.02■□□□□ 0.32
COL9A3-210ENST00000472880 TTC33Q6PID6 262 aaPredicted RBP17.02■□□□□ 0.32
COL9A3-210ENST00000472880 LINC00114Q6XXX2 140 aa17.02■□□□□ 0.32
COL9A3-210ENST00000472880 SLC35D2Q76EJ3 337 aa17.02■□□□□ 0.32
COL9A3-210ENST00000472880 SLC30A8Q8IWU4 369 aa17.02■□□□□ 0.32
COL9A3-210ENST00000472880 DPP10Q8N608 796 aa17.02■□□□□ 0.32
COL9A3-210ENST00000472880 GPR32P1Q8NGA4 272 aa17.02■□□□□ 0.32
COL9A3-210ENST00000472880 ADAMTS16Q8TE57 1224 aa17.02■□□□□ 0.32
COL9A3-210ENST00000472880 STON2Q8WXE9 905 aa17.02■□□□□ 0.32
COL9A3-210ENST00000472880 SYT3Q9BQG1 590 aa17.02■□□□□ 0.32
COL9A3-210ENST00000472880 C19orf24Q9BVV8 132 aa17.02■□□□□ 0.32
COL9A3-210ENST00000472880 MS4A5Q9H3V2 200 aa17.02■□□□□ 0.32
COL9A3-210ENST00000472880 REV1Q9UBZ9 1251 aa17.02■□□□□ 0.32
COL9A3-210ENST00000472880 TRIM33Q9UPN9 1127 aa17.02■□□□□ 0.32
COL9A3-210ENST00000472880 LYNX1G3V0Z9 82 aa17.01■□□□□ 0.31
COL9A3-210ENST00000472880 KPNA4O00629 521 aaPredicted RBP17.01■□□□□ 0.31
COL9A3-210ENST00000472880 RNF13O43567 381 aa17.01■□□□□ 0.31
COL9A3-210ENST00000472880 CH25HO95992 272 aa17.01■□□□□ 0.31
COL9A3-210ENST00000472880 LYNX1P0DP58 116 aa17.01■□□□□ 0.31
COL9A3-210ENST00000472880 RIN1Q13671 783 aa17.01■□□□□ 0.31
COL9A3-210ENST00000472880 NFYCQ13952 458 aa17.01■□□□□ 0.31
COL9A3-210ENST00000472880 RAB39AQ14964 217 aa17.01■□□□□ 0.31
COL9A3-210ENST00000472880 ZNF74Q16587 644 aa17.01■□□□□ 0.31
COL9A3-210ENST00000472880 MSMPQ1L6U9 139 aa17.01■□□□□ 0.31
COL9A3-210ENST00000472880 UGT2A3Q6UWM9 527 aa17.01■□□□□ 0.31
COL9A3-210ENST00000472880 WDR88Q6ZMY6 472 aa17.01■□□□□ 0.31
COL9A3-210ENST00000472880 PIWIL3Q7Z3Z3 882 aaKnown RBP17.01■□□□□ 0.31
COL9A3-210ENST00000472880 PATL1Q86TB9 770 aaKnown RBP17.01■□□□□ 0.31
COL9A3-210ENST00000472880 LINC01356Q8N9X3 169 aa17.01■□□□□ 0.31
COL9A3-210ENST00000472880 OR6X1Q8NH79 312 aa17.01■□□□□ 0.31
COL9A3-210ENST00000472880 SLC26A7Q8TE54 656 aa17.01■□□□□ 0.31
COL9A3-210ENST00000472880 TMEM54Q969K7 222 aa17.01■□□□□ 0.31
COL9A3-210ENST00000472880 ZNF566Q969W8 418 aa17.01■□□□□ 0.31
COL9A3-210ENST00000472880 THOC1Q96FV9 657 aaKnown RBP17.01■□□□□ 0.31
COL9A3-210ENST00000472880 NANSQ9NR45 359 aa17.01■□□□□ 0.31
COL9A3-210ENST00000472880 GLTPQ9NZD2 209 aa17.01■□□□□ 0.31
COL9A3-210ENST00000472880 SLC7A8Q9UHI5 535 aa17.01■□□□□ 0.31
COL9A3-210ENST00000472880 SLC7A7Q9UM01 511 aa17.01■□□□□ 0.31
COL9A3-210ENST00000472880 TRAPPC13A5PLN9 417 aa17■□□□□ 0.31
COL9A3-210ENST00000472880 UMPSP11172 480 aa17■□□□□ 0.31
COL9A3-210ENST00000472880 SRSF2Q01130 221 aaKnown RBP17■□□□□ 0.31
COL9A3-210ENST00000472880 CCNIQ14094 377 aa17■□□□□ 0.31
COL9A3-210ENST00000472880 MELKQ14680 651 aa17■□□□□ 0.31
COL9A3-210ENST00000472880 TRIP10Q15642 601 aa17■□□□□ 0.31
COL9A3-210ENST00000472880 INTS11Q5TA45 600 aaKnown RBP17■□□□□ 0.31
COL9A3-210ENST00000472880 REP15Q6BDI9 236 aa17■□□□□ 0.31
COL9A3-210ENST00000472880 RETREG3Q86VR2 466 aa17■□□□□ 0.31
COL9A3-210ENST00000472880 MPP4Q96JB8 637 aa17■□□□□ 0.31
COL9A3-210ENST00000472880 ZNF229Q9UJW7 825 aa17■□□□□ 0.31
COL9A3-210ENST00000472880 A0A1W2PPW3 197 aa16.99■□□□□ 0.31
COL9A3-210ENST00000472880 FARS2O95363 451 aaKnown RBP16.99■□□□□ 0.31
COL9A3-210ENST00000472880 HIST1H2ABP04908 130 aa16.99■□□□□ 0.31
COL9A3-210ENST00000472880 PATE4P0C8F1 98 aa16.99■□□□□ 0.31
COL9A3-210ENST00000472880 OR8G3PP0DMU2 310 aa16.99■□□□□ 0.31
COL9A3-210ENST00000472880 CD247P20963 164 aa16.99■□□□□ 0.31
COL9A3-210ENST00000472880 PCGF2P35227 344 aa16.99■□□□□ 0.31
COL9A3-210ENST00000472880 SRP14P37108 136 aaKnown RBP16.99■□□□□ 0.31
COL9A3-210ENST00000472880 ALDH3B1P43353 468 aa16.99■□□□□ 0.31
COL9A3-210ENST00000472880 CDH15P55291 814 aa16.99■□□□□ 0.31
COL9A3-210ENST00000472880 ZP4Q12836 540 aa16.99■□□□□ 0.31
COL9A3-210ENST00000472880 FXNQ16595 210 aa16.99■□□□□ 0.31
COL9A3-210ENST00000472880 HIST3H2AQ7L7L0 130 aa16.99■□□□□ 0.31
COL9A3-210ENST00000472880 RBM45Q8IUH3 476 aaKnown RBP16.99■□□□□ 0.31
COL9A3-210ENST00000472880 SKA3Q8IX90 412 aa16.99■□□□□ 0.31
COL9A3-210ENST00000472880 SLC22A24Q8N4F4 322 aa16.99■□□□□ 0.31
COL9A3-210ENST00000472880 OR4D11Q8NGI4 311 aa16.99■□□□□ 0.31
COL9A3-210ENST00000472880 HIST1H2ACQ93077 130 aa16.99■□□□□ 0.31
COL9A3-210ENST00000472880 SLC25A44Q96H78 314 aaPredicted RBP16.99■□□□□ 0.31
COL9A3-210ENST00000472880 SLC19A3Q9BZV2 496 aa16.99■□□□□ 0.31
COL9A3-210ENST00000472880 ZNF385DQ9H6B1 395 aa16.99■□□□□ 0.31
COL9A3-210ENST00000472880 KAT8Q9H7Z6 458 aaKnown RBP16.99■□□□□ 0.31
COL9A3-210ENST00000472880 NPHS2Q9NP85 383 aa16.99■□□□□ 0.31
COL9A3-210ENST00000472880 TAS2R5Q9NYW4 299 aa16.99■□□□□ 0.31
COL9A3-210ENST00000472880 TMEFF2Q9UIK5 374 aaPredicted RBP16.99■□□□□ 0.31
COL9A3-210ENST00000472880 FZR1Q9UM11 496 aa16.99■□□□□ 0.31
COL9A3-210ENST00000472880 LYPD3O95274 346 aa16.98■□□□□ 0.31
COL9A3-210ENST00000472880 THY1P04216 161 aa16.98■□□□□ 0.31
COL9A3-210ENST00000472880 SERPINA5P05154 406 aa16.98■□□□□ 0.31
COL9A3-210ENST00000472880 TCN1P20061 433 aaPredicted RBP16.98■□□□□ 0.31
COL9A3-210ENST00000472880 MAD2L1BPQ15013 274 aaPredicted RBP16.98■□□□□ 0.31
COL9A3-210ENST00000472880 HSP90B2PQ58FF3 399 aa16.98■□□□□ 0.31
COL9A3-210ENST00000472880 ELFN2Q5R3F8 820 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms