RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 GNPDA1P46926 289 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 HTR5AP47898 357 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 DNASE1L1P49184 302 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 ST3GAL3Q11203 375 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 PNRC1Q12796 327 aaPredicted RBP4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 DLG1Q12959 904 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 GAGE2BQ13066 116 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 RAB31Q13636 194 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 ITGA9Q13797 1035 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 SLC1A5Q15758 541 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 ZNF77Q15935 545 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 ZNF74Q16587 644 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 HAGHQ16775 308 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 RPEL1Q2QD12 228 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 SNAI3Q3KNW1 292 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 GAGE2EQ4V326 116 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 RFTN2Q52LD8 501 aaPredicted RBP4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 ACSM3Q53FZ2 586 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 TRIQKQ629K1 86 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 SAXO2Q658L1 398 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 CYB5R2Q6BCY4 276 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 GAGE2AQ6NT46 116 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 ZFP1Q6P2D0 407 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 FAM199XQ6PEV8 388 aaPredicted RBP4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 ENPP6Q6UWR7 440 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 CYHR1Q6ZMK1 362 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 OR2W3Q7Z3T1 314 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 TMED4Q7Z7H5 227 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 MOB3BQ86TA1 216 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 ITIH5Q86UX2 942 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 NRMQ8IXM6 262 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 RIMKLAQ8IXN7 391 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 THAP8Q8NA92 274 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 NEXN-AS1Q8NBZ9 246 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 OR4F6Q8NGB9 312 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 OR56A4Q8NGH8 313 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 OR10V1Q8NGI7 309 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 OR5AK3PQ8NH89 298 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 LRRC15Q8TF66 581 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 BAALCQ8WXS3 180 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 TMBIM1Q969X1 311 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 MARC2Q969Z3 335 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 APH1AQ96BI3 265 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 WBP1Q96G27 269 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 OR2V2Q96R30 315 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 ERGIC2Q96RQ1 377 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 MRPS26Q9BYN8 205 aaKnown RBP4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 BARHL1Q9BZE3 327 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 LHPPQ9H008 270 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 UGT1A7Q9HAW7 530 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 NMRAL1Q9HBL8 299 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 CUTCQ9NTM9 273 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 FGFR1OP2Q9NVK5 253 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 IL36RNQ9UBH0 155 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 SLC9A2Q9UBY0 812 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 GAGE2DQ9UEU5 116 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 MRTO4Q9UKD2 239 aaKnown RBP4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 NUP50Q9UKX7 468 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 RAB26Q9ULW5 256 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 NPIPA1Q9UND3 350 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 KLHDC2Q9Y2U9 406 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 ARL2BPQ9Y2Y0 163 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 OR51B4Q9Y5P0 310 aa4.19□□□□□ -1.74
CCDC88A-210ENST00000468534 ERCC6Q03468 1493 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 MSH6P52701 1360 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 NPIPA5A0A0B4J1W7 369 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 hCG_38984A0A1B0GV85 526 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 C17orf105B2RV13 164 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 DISC1C4P0D8 188 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 H7C0C1 242 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 DCTN6O00399 190 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 HSPB6O14558 160 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 TAPBPO15533 448 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 ZNF749O43361 778 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 SNX3O60493 162 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 EIF1BO60739 113 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 AQP8O94778 261 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 DIRAS1O95057 198 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 TIMP1P01033 207 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 IGLV2-11P01706 119 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 ZNF35P13682 527 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 GTF2F2P13984 249 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 IRF2P14316 349 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 IGFBP5P24593 272 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 SSTR2P30874 369 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 SSTR5P35346 364 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 RPL13AP40429 203 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 EIF1P41567 113 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 BTDP43251 543 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 NKX2-1P43699 371 aaPredicted RBP4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 CX3CR1P49238 355 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 SRP9P49458 86 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 PPOXP50336 477 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 KRTAP10-5P60370 271 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 UBE2MP61081 183 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 RPS15AP62244 130 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 RPS6P62753 249 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 RPL19P84098 196 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 KLRB1Q12918 225 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms