RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 MBD2Q9UBB5 411 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 RAB19A4D1S5 217 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 PRKNO60260 465 aaPredicted RBP10.66□□□□□ -0.7
CPSF3-202ENST00000460593 ZNF888P0CJ79 500 aaPredicted RBP10.66□□□□□ -0.7
CPSF3-202ENST00000460593 ERGP11308 486 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 TRA2BP62995 288 aaKnown RBP10.66□□□□□ -0.7
CPSF3-202ENST00000460593 DEFB134Q4QY38 66 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 ATPAF1Q5TC12 328 aaPredicted RBP10.66□□□□□ -0.7
CPSF3-202ENST00000460593 DHRS7BQ6IAN0 325 aaPredicted RBP10.66□□□□□ -0.7
CPSF3-202ENST00000460593 C3orf33Q6P1S2 294 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 ARHGAP11AQ6P4F7 1023 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 GTPBP8Q8N3Z3 284 aaPredicted RBP10.66□□□□□ -0.7
CPSF3-202ENST00000460593 OR2L5Q8NG80 312 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 OR5AK2Q8NH90 309 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 ROBO4Q8WZ75 1007 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 SFXN1Q9H9B4 322 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 SPHK2Q9NRA0 654 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 ZFP57Q9NU63 452 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 PRR13Q9NZ81 148 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 COMMD9Q9P000 198 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 MIOXQ9UGB7 285 aa10.66□□□□□ -0.7
CPSF3-202ENST00000460593 A0A0D9SG52 128 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 C13orf42A0A1B0GVH6 325 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 SULT2B1O00204 365 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 TGM5O43548 720 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 RAB3DO95716 219 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 ITGA5P08648 1049 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 CSF1P09603 554 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 NID1P14543 1247 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 PGAM2P15259 253 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 DIO1P49895 249 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 DUSP8Q13202 625 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 SQSTM1Q13501 440 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 RAB33AQ14088 237 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 NNATQ16517 81 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 ARHGAP11BQ3KRB8 267 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 ALG10BQ5I7T1 473 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 PRAMEF17Q5VTA0 474 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 RNF44Q7L0R7 432 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 C12orf40Q86WS4 652 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 NKD1Q969G9 470 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 MOAP1Q96BY2 351 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 GPN3Q9UHW5 284 aaPredicted RBP10.65□□□□□ -0.7
CPSF3-202ENST00000460593 MRM2Q9UI43 246 aaKnown RBP10.65□□□□□ -0.7
CPSF3-202ENST00000460593 C17orf113A0A1B0GUU1 675 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 DCTN6O00399 190 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 DCNP07585 359 aaKnown RBP10.65□□□□□ -0.7
CPSF3-202ENST00000460593 CALCBP10092 127 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 GABRA3P34903 492 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 PRSS3P35030 304 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 POU4F2Q12837 409 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 FAM53BQ14153 422 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 ZIC1Q15915 447 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 MICBQ29980 383 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 Q499Y3 187 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 SLC22A6Q4U2R8 563 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 MTSS1LQ765P7 747 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 TCEAL8Q8IYN2 117 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 ZNF619Q8N2I2 560 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 LRRC25Q8N386 305 aaPredicted RBP10.65□□□□□ -0.7
CPSF3-202ENST00000460593 CLEC1AQ8NC01 280 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 NPEPL1Q8NDH3 523 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 BHLHE23Q8NDY6 225 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 OR4N2Q8NGD1 307 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 EDARADDQ8WWZ3 215 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 NXPE3Q969Y0 559 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 ZNF764Q96H86 408 aaPredicted RBP10.65□□□□□ -0.7
CPSF3-202ENST00000460593 ADAD1Q96M93 576 aaKnown RBP10.65□□□□□ -0.7
CPSF3-202ENST00000460593 CDV3Q9UKY7 258 aaKnown RBP10.65□□□□□ -0.7
CPSF3-202ENST00000460593 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.65□□□□□ -0.7
CPSF3-202ENST00000460593 CHD7Q9P2D1 2997 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 TRPM6Q9BX84 2022 aa10.65□□□□□ -0.7
CPSF3-202ENST00000460593 TRBV23OR9-2A0A075B6M9 112 aa10.65□□□□□ -0.71
CPSF3-202ENST00000460593 FITM1A5D6W6 292 aa10.65□□□□□ -0.71
CPSF3-202ENST00000460593 DUXAA6NLW8 204 aa10.65□□□□□ -0.71
CPSF3-202ENST00000460593 SSX5O60225 188 aa10.65□□□□□ -0.71
CPSF3-202ENST00000460593 EFEMP2O95967 443 aa10.65□□□□□ -0.71
CPSF3-202ENST00000460593 LRG1P02750 347 aa10.65□□□□□ -0.71
CPSF3-202ENST00000460593 ADH6P28332 368 aa10.65□□□□□ -0.71
CPSF3-202ENST00000460593 ID4P47928 161 aa10.65□□□□□ -0.71
CPSF3-202ENST00000460593 MRPS10P82664 201 aaKnown RBP10.65□□□□□ -0.71
CPSF3-202ENST00000460593 EIPR1Q53HC9 387 aa10.65□□□□□ -0.71
CPSF3-202ENST00000460593 LEG1Q6P5S2 330 aa10.65□□□□□ -0.71
CPSF3-202ENST00000460593 NRROSQ86YC3 692 aa10.65□□□□□ -0.71
CPSF3-202ENST00000460593 NRSN1Q8IZ57 195 aa10.65□□□□□ -0.71
CPSF3-202ENST00000460593 RNF113BQ8IZP6 322 aaKnown RBP10.65□□□□□ -0.71
CPSF3-202ENST00000460593 CRIPAKQ8N1N5 446 aa10.65□□□□□ -0.71
CPSF3-202ENST00000460593 ZNF676Q8N7Q3 588 aa10.65□□□□□ -0.71
CPSF3-202ENST00000460593 CAMKVQ8NCB2 501 aa10.65□□□□□ -0.71
CPSF3-202ENST00000460593 OR5M8Q8NGP6 311 aa10.65□□□□□ -0.71
CPSF3-202ENST00000460593 ELP5Q8TE02 316 aa10.65□□□□□ -0.71
CPSF3-202ENST00000460593 CYYR1Q96J86 154 aa10.65□□□□□ -0.71
CPSF3-202ENST00000460593 LINC00615Q96LM1 132 aaPredicted RBP10.65□□□□□ -0.71
CPSF3-202ENST00000460593 CMTM3Q96MX0 182 aa10.65□□□□□ -0.71
CPSF3-202ENST00000460593 TMEM27Q9HBJ8 222 aa10.65□□□□□ -0.71
CPSF3-202ENST00000460593 OR2S2Q9NQN1 319 aa10.65□□□□□ -0.71
CPSF3-202ENST00000460593 GHRLQ9UBU3 117 aa10.65□□□□□ -0.71
CPSF3-202ENST00000460593 RPH3AQ9Y2J0 694 aaPredicted RBP10.65□□□□□ -0.71
CPSF3-202ENST00000460593 MPDZO75970 2070 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 TICRRQ7Z2Z1 1910 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms