RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ACVR1CQ8NER5 493 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 BPIFCQ8NFQ6 507 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 RTL8AQ9BWD3 113 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 FGFBP2Q9BYJ0 223 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 MMACHCQ9Y4U1 282 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 PCCBP05166 539 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 SPCS3P61009 180 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 ATP6V1FQ16864 119 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 TOR2AQ5JU69 321 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 OR51A7Q8NH64 312 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 TIMM29Q9BSF4 260 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 MARVELD1Q9BSK0 173 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 TNRC6CQ9HCJ0 1690 aaKnown RBP6.67□□□□□ -1.34
VPS53-204ENST00000437048 XRCC3O43542 346 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 MPIG6BO95866 241 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 CD14P08571 375 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 ZNF684Q5T5D7 378 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 SIAH3Q8IW03 269 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 CPEB3Q8NE35 698 aaKnown RBP6.67□□□□□ -1.34
VPS53-204ENST00000437048 AKR7LQ8NHP1 331 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 UTP4Q969X6 686 aaKnown RBP6.67□□□□□ -1.34
VPS53-204ENST00000437048 SMIM19Q96E16 107 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 MCTS1Q9ULC4 181 aaKnown RBP6.67□□□□□ -1.34
VPS53-204ENST00000437048 RGPD8O14715 1765 aaPredicted RBP6.67□□□□□ -1.34
VPS53-204ENST00000437048 CASP6P55212 293 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 MRPS34P82930 218 aaKnown RBP6.67□□□□□ -1.34
VPS53-204ENST00000437048 INPP5KQ9BT40 448 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 SOX7Q9BT81 388 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 BEX1Q9HBH7 125 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 B4GALT6Q9UBX8 382 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 FAM183AA6NL82 134 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 FASLGP48023 281 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 NOVA1P51513 510 aaKnown RBP6.67□□□□□ -1.34
VPS53-204ENST00000437048 BAXQ07812 192 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 OR4A47Q6IF82 309 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 OR4A4PQ8NGN8 299 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 CPPED1Q9BRF8 314 aaPredicted RBP6.67□□□□□ -1.34
VPS53-204ENST00000437048 SMIM30A4D0T7 59 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 RPL24P83731 157 aaKnown RBP6.67□□□□□ -1.34
VPS53-204ENST00000437048 ALKAL2Q6UX46 152 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 ETV3LQ6ZN32 361 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 OR13C4Q8NGS5 318 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 OR14A16Q8NHC5 309 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 CDC42EP3Q9UKI2 254 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 MMP24Q9Y5R2 645 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 RGPD5Q99666 1765 aa6.67□□□□□ -1.34
VPS53-204ENST00000437048 FIGNL2A6NMB9 653 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 CEBPBP17676 345 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 GABRB1P18505 474 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 SLC35A1P78382 337 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 HLXQ14774 488 aaPredicted RBP6.66□□□□□ -1.34
VPS53-204ENST00000437048 RPL7L1Q6DKI1 246 aaKnown RBP6.66□□□□□ -1.34
VPS53-204ENST00000437048 FAM110BQ8TC76 370 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 FOXJ1Q92949 421 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 TMEM106AQ96A25 262 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 NEIL1Q96FI4 390 aaPredicted RBP6.66□□□□□ -1.34
VPS53-204ENST00000437048 TMED3Q9Y3Q3 217 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 TP53BP1Q12888 1972 aaPredicted RBP6.66□□□□□ -1.34
VPS53-204ENST00000437048 ANKRD61A6NGH8 418 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 MT-ND6P03923 174 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 ADCYAP1R1P41586 468 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 SPINT3P49223 89 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 ERVPABLB-1P60509 514 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 TMEM128Q5BJH2 165 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 GPR119Q8TDV5 335 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 MRPS24Q96EL2 167 aaKnown RBP6.66□□□□□ -1.34
VPS53-204ENST00000437048 TRIB1Q96RU8 372 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 ZNF160Q9HCG1 818 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 SERTAD4Q9NUC0 356 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 FHITP49789 147 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 ISL1P61371 349 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 FPGSQ05932 587 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 FAM3DQ96BQ1 224 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 C4orf36Q96KX1 117 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 FBXO34Q9NWN3 711 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 ZNF727A8MUV8 499 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 ZNF207O43670 478 aaKnown RBP6.66□□□□□ -1.34
VPS53-204ENST00000437048 LAMP1P11279 417 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 CST9LP1Q5W188 147 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 SLC9B1P1A6NJY1 282 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 CD52P31358 61 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 NAA10P41227 235 aaPredicted RBP6.66□□□□□ -1.34
VPS53-204ENST00000437048 CSKP41240 450 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 GPR4P46093 362 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 OR1E2P47887 323 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 GRB7Q14451 532 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 CPT1CQ8TCG5 803 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 ST8SIA2Q92186 375 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 DPF1Q92782 380 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 DUXBA0A1W2PPF3 345 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 GM2AP17900 193 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 HNF1AP20823 631 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 APLNRP35414 380 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 FAM3BP58499 235 aaPredicted RBP6.66□□□□□ -1.34
VPS53-204ENST00000437048 ACY1Q03154 408 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 KCTD11Q693B1 232 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 OR2T2Q6IF00 324 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 OTOP2Q7RTS6 562 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 UCN3Q969E3 161 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 WDR61Q9GZS3 305 aaKnown RBP6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms