RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 ACAA2P42765 397 aaKnown RBP12.94□□□□□ -0.34
HMGA1-203ENST00000374116 CBX5P45973 191 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 RFX3P48380 749 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 RNF144AP50876 292 aaPredicted RBP12.94□□□□□ -0.34
HMGA1-203ENST00000374116 GPR143P51810 404 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 FABP5Q01469 135 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 BDH1Q02338 343 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 MXD1Q05195 221 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 TMEM81Q6P7N7 255 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 ZNF550Q7Z398 422 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 CMIPQ8IY22 773 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 GALNT16Q8N428 558 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 C16orf52Q8NHV5 167 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 ZNF721Q8TF20 911 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 ZNF431Q8TF32 576 aaPredicted RBP12.94□□□□□ -0.34
HMGA1-203ENST00000374116 FER1L6-AS2Q96M78 137 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 PELOQ9BRX2 385 aaKnown RBP12.94□□□□□ -0.34
HMGA1-203ENST00000374116 TMEM43Q9BTV4 400 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 ZNF426Q9BUY5 554 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 IFT27Q9BW83 186 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 PPIL3Q9H2H8 161 aaKnown RBP12.94□□□□□ -0.34
HMGA1-203ENST00000374116 PRORYQ9H606 182 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 Q9N2J8 555 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 ZFP64Q9NPA5 681 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 MEPEQ9NQ76 525 aaPredicted RBP12.94□□□□□ -0.34
HMGA1-203ENST00000374116 CMC2Q9NRP2 79 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 MED9Q9NWA0 146 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 DNAJB12Q9NXW2 375 aaKnown RBP12.94□□□□□ -0.34
HMGA1-203ENST00000374116 FLRT3Q9NZU0 649 aa12.94□□□□□ -0.34
HMGA1-203ENST00000374116 YARS2Q9Y2Z4 477 aaKnown RBP12.94□□□□□ -0.34
HMGA1-203ENST00000374116 BSNQ9UPA5 3926 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 FAM240BA0A1B0GVZ2 78 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 A0A1B0GWA3 101 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 FAM183AA6NL82 134 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 HLA-DPB1P04440 258 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 FAM87AP0C7U9 286 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 GALP22466 123 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 SDC2P34741 201 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 HNRNPA0Q13151 305 aaKnown RBP12.93□□□□□ -0.34
HMGA1-203ENST00000374116 FGFBP1Q14512 234 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 ZNF322Q6U7Q0 402 aaPredicted RBP12.93□□□□□ -0.34
HMGA1-203ENST00000374116 TRILQ7L0X0 811 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 OR8H3Q8N146 312 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 ACBD7Q8N6N7 88 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 ZNF614Q8N883 585 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.93□□□□□ -0.34
HMGA1-203ENST00000374116 SLC37A3Q8NCC5 494 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 FDCSPQ8NFU4 85 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 OR13C2Q8NGS9 318 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 GRHL3Q8TE85 626 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 DAZLQ92904 295 aaKnown RBP12.93□□□□□ -0.34
HMGA1-203ENST00000374116 PTP4A1Q93096 173 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 OTULINQ96BN8 352 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 IP6K3Q96PC2 410 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 ENKD1Q9H0I2 346 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 OR10A5Q9H207 317 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 INPP5EQ9NRR6 644 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 ASB6Q9NWX5 421 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 ZNF224Q9NZL3 707 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 UBQLN2Q9UHD9 624 aa12.93□□□□□ -0.34
HMGA1-203ENST00000374116 TRBV11-1A0A0K0K1C0 115 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 A0A1W2PRG6 482 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 SLC22A31A6NKX4 558 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 PRR23D1E9PI22 279 aaPredicted RBP12.92□□□□□ -0.34
HMGA1-203ENST00000374116 INMT-MINDY4F8WBC2 141 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 K7EM74 188 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 FABP7O15540 132 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 ADAM11O75078 769 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 LALBAP00709 142 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 CYC1P08574 325 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 PRR23D2P0DMB1 279 aaPredicted RBP12.92□□□□□ -0.34
HMGA1-203ENST00000374116 SLC2A2P11168 524 aaPredicted RBP12.92□□□□□ -0.34
HMGA1-203ENST00000374116 ATP12AP54707 1039 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 HSD17B12Q53GQ0 312 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 LINC00114Q6XXX2 140 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 OR51G2Q8NGK0 314 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 SPRYD4Q8WW59 207 aaPredicted RBP12.92□□□□□ -0.34
HMGA1-203ENST00000374116 RBPMSQ93062 196 aaKnown RBP12.92□□□□□ -0.34
HMGA1-203ENST00000374116 WBP1Q96G27 269 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 KLHL15Q96M94 604 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 UQCC2Q9BRT2 126 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 RERGLQ9H628 205 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 GALNT9Q9HCQ5 603 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 ZC4H2Q9NQZ6 224 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 KIF25Q9UIL4 384 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 SLC35A3Q9Y2D2 325 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 CNTRLQ7Z7A1 2325 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 RIIAD1A6NNX1 92 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 SMLR1H3BR10 107 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 CLEC2LP0C7M8 214 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 AIMP2Q13155 320 aaKnown RBP12.92□□□□□ -0.34
HMGA1-203ENST00000374116 ZNF273Q14593 569 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 NNATQ16517 81 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 ZNF791Q3KP31 576 aaPredicted RBP12.92□□□□□ -0.34
HMGA1-203ENST00000374116 LINC00303Q3SY05 128 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 ALG10BQ5I7T1 473 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 ULK3Q6PHR2 472 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 TFAP2EQ6VUC0 442 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 THSD4Q6ZMP0 1018 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 RTL4Q6ZR62 310 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms