RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 DDOSTP39656 456 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 BCAP31P51572 246 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 ARF1P84077 181 aaKnown RBP7.61□□□□□ -1.19
HMGB1-203ENST00000341423 HSF1Q00613 529 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 CDONQ4KMG0 1287 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 IGDCC3Q8IVU1 814 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 CA13Q8N1Q1 262 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 NPWQ8N729 165 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 OR5D13Q8NGL4 314 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 TMED9Q9BVK6 235 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 PLEKHA3Q9HB20 300 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 SIDT1Q9NXL6 827 aaKnown RBP7.61□□□□□ -1.19
HMGB1-203ENST00000341423 ZNF629Q9UEG4 869 aaPredicted RBP7.61□□□□□ -1.19
HMGB1-203ENST00000341423 TLX2O43763 284 aaPredicted RBP7.61□□□□□ -1.19
HMGB1-203ENST00000341423 OR7C1O76099 320 aaPredicted RBP7.61□□□□□ -1.19
HMGB1-203ENST00000341423 FUCA1P04066 466 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 CDK9P50750 372 aaKnown RBP7.61□□□□□ -1.19
HMGB1-203ENST00000341423 GP2P55259 537 aaKnown RBP7.61□□□□□ -1.19
HMGB1-203ENST00000341423 CLDN10P78369 228 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 LY6EQ16553 131 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 GLYATQ6IB77 296 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 FAM57BQ71RH2 274 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 CARM1Q86X55 608 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 ZNF573Q86YE8 665 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 PDZD9Q8IXQ8 264 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 ELMOD2Q8IZ81 293 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 DEFB107AQ8IZN7 70 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 RPS4Y2Q8TD47 263 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 EPS8L3Q8TE67 593 aaKnown RBP7.61□□□□□ -1.19
HMGB1-203ENST00000341423 APOBEC3DQ96AK3 386 aaPredicted RBP7.61□□□□□ -1.19
HMGB1-203ENST00000341423 RASL10BQ96S79 203 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 CSF3RQ99062 836 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 SLC2A8Q9NY64 477 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 TAGLN3Q9UI15 199 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 RNF24Q9Y225 148 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 IGHV3-64DA0A0J9YX35 117 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 H3BSH0 61 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 ARL6IP5O75915 188 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 AGBL2Q5U5Z8 902 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 OR6V1Q8N148 313 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 DMBX1Q8NFW5 382 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 OR2T33Q8NG76 320 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 IL17DQ8TAD2 202 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 CCDC28BQ9BUN5 200 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 MCRIP2Q9BUT9 160 aaKnown RBP7.61□□□□□ -1.19
HMGB1-203ENST00000341423 TXLNGYQ9BZA5 131 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 PRSS22Q9GZN4 317 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 NT5DC2Q9H857 520 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 RSL24D1Q9UHA3 163 aaKnown RBP7.61□□□□□ -1.19
HMGB1-203ENST00000341423 PPIAL4EA0A075B759 164 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 ANKRD33BA6NCL7 494 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 KDM4EB2RXH2 506 aaPredicted RBP7.61□□□□□ -1.19
HMGB1-203ENST00000341423 PPIAL4DF5H284 164 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 WNT7AO00755 349 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 ATP6V1G1O75348 118 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 PPIAL4FP0DN26 164 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 BAIAP2L2Q6UXY1 529 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 AHSA2Q719I0 299 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 SVOPLQ8N434 492 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 DHRS9Q9BPW9 319 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 RIMS4Q9H426 269 aaPredicted RBP7.61□□□□□ -1.19
HMGB1-203ENST00000341423 CGGBP1Q9UFW8 167 aaPredicted RBP7.61□□□□□ -1.19
HMGB1-203ENST00000341423 POMPQ9Y244 141 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 ZNF337Q9Y3M9 751 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 PPIAL4AQ9Y536 164 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 BCORQ6W2J9 1755 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 EDIL3O43854 480 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 BANF1O75531 89 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 JTBO76095 146 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 COL8A1P27658 744 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 SLC37A1P57057 533 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 PSME3P61289 254 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 RIPPLY1Q0D2K3 151 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 HNF4GQ14541 408 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 CTU2Q2VPK5 515 aaKnown RBP7.6□□□□□ -1.19
HMGB1-203ENST00000341423 ZBTB37Q5TC79 503 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 RANBP10Q6VN20 620 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 ALKBH3Q96Q83 286 aaPredicted RBP7.6□□□□□ -1.19
HMGB1-203ENST00000341423 FOXB1Q99853 325 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 SLC6A7Q99884 636 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 HAPLN2Q9GZV7 340 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 SEPSECSQ9HD40 501 aaKnown RBP7.6□□□□□ -1.19
HMGB1-203ENST00000341423 MAN2C1Q9NTJ4 1040 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 IGLV3-10A0A075B6K4 115 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 IGHV3-15A0A0B4J1V0 119 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 A0A1W2PR77 199 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 TCRBV4S1A1TA0A5B7 111 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 NDUFA2O43678 99 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 PRKRAO75569 313 aaKnown RBP7.6□□□□□ -1.19
HMGB1-203ENST00000341423 C1QL1O75973 258 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 NCR1O76036 304 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 AKR1C4P17516 323 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 MPGP29372 298 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 RBM48Q5RL73 367 aaKnown RBP7.6□□□□□ -1.19
HMGB1-203ENST00000341423 VASNQ6EMK4 673 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 TMPRSS11FQ6ZWK6 438 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 HIPK1Q86Z02 1210 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 CBLN4Q9NTU7 201 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 ZNF639Q9UID6 485 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 RALYQ9UKM9 306 aaKnown RBP7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms