RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 NOXO1Q8NFA2 376 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 PRR14Q9BWN1 585 aa9.23□□□□□ -0.93
USP54-201ENST00000339859 MRPS18BQ9Y676 258 aaKnown RBP9.23□□□□□ -0.93
USP54-201ENST00000339859 A0A1B0GTL3 188 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 CYR61O00622 381 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 ZNF182P17025 639 aaPredicted RBP9.22□□□□□ -0.93
USP54-201ENST00000339859 ADH6P28332 368 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 CX3CR1P49238 355 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 RGS6P49758 472 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 ROR2Q01974 943 aaKnown RBP9.22□□□□□ -0.93
USP54-201ENST00000339859 C4orf46Q504U0 113 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 ZBTB46Q86UZ6 589 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 CCDC36Q8IYA8 594 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 C17orf47Q8NEP4 570 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 OR2M7Q8NG81 312 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 GNRHR2Q96P88 292 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 C12orf10Q9HB07 376 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 ORC5O43913 435 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 DAPP51397 102 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 FZD5Q13467 585 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 ZNF141Q15928 474 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 ACKR1Q16570 336 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 SSX6Q7RTT6 188 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 LINC00346Q8IVM7 164 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 RIMKLAQ8IXN7 391 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 ANKRD60Q9BZ19 345 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 ZNF281Q9Y2X9 895 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 CBX7O95931 251 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 LAP3P28838 519 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 OPRM1P35372 400 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 DIO1P49895 249 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 RPL18Q07020 188 aaKnown RBP9.22□□□□□ -0.93
USP54-201ENST00000339859 CLN3Q13286 438 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 C19orf48Q6RUI8 117 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 DCXRQ7Z4W1 244 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 ARIH2OSQ8N7S6 290 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 METTL8Q9H825 291 aaKnown RBP9.22□□□□□ -0.93
USP54-201ENST00000339859 LANCL2Q9NS86 450 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 CDHR4A6H8M9 788 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 B4DXG7 233 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 IMPA2O14732 288 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 FOXS1O43638 330 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 PAX7P23759 505 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 MAGEA2P43356 314 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 TMBIM6P55061 237 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 PLGLAQ15195 96 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 OR8G1Q15617 311 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 ARHGAP22Q7Z5H3 698 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 PTPMT1Q8WUK0 201 aaPredicted RBP9.22□□□□□ -0.93
USP54-201ENST00000339859 MOB1AQ9H8S9 216 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 PLEKHJ1Q9NW61 149 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 PILRAQ9UKJ1 303 aa9.22□□□□□ -0.93
USP54-201ENST00000339859 NKX2-8O15522 239 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 CDK1P06493 297 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 GABRR1P24046 479 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 RBM45Q8IUH3 476 aaKnown RBP9.21□□□□□ -0.93
USP54-201ENST00000339859 SFTPA2Q8IWL1 248 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 LRRC56Q8IYG6 542 aaPredicted RBP9.21□□□□□ -0.93
USP54-201ENST00000339859 NUDT8Q8WV74 236 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 TM4SF19Q96DZ7 209 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 TMEM43Q9BTV4 400 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 EMC6Q9BV81 110 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 SLC38A1Q9H2H9 487 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 DPAGT1Q9H3H5 408 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 MED20Q9H944 212 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 PLAC1Q9HBJ0 212 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 TRIM64A6NGJ6 449 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 DLGAP1O14490 977 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 AGFG2O95081 481 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 SERPINA5P05154 406 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 DBHP09172 617 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 ARRB2P32121 409 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 BDH1Q02338 343 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 CHDHQ8NE62 594 aaPredicted RBP9.21□□□□□ -0.93
USP54-201ENST00000339859 ZNF420Q8TAQ5 688 aaPredicted RBP9.21□□□□□ -0.93
USP54-201ENST00000339859 TXNDC15Q96J42 360 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 SLC6A15Q9H2J7 730 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 TP63Q9H3D4 680 aaPredicted RBP9.21□□□□□ -0.93
USP54-201ENST00000339859 OPA3Q9H6K4 179 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 QPCTLQ9NXS2 382 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 TRPM6Q9BX84 2022 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 FRMPD3Q5JV73 1810 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 RBBP9O75884 186 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 IDH3GP51553 393 aaPredicted RBP9.21□□□□□ -0.93
USP54-201ENST00000339859 KLRB1Q12918 225 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 NADK2Q4G0N4 442 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 GXYLT1Q4G148 440 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 KDM8Q8N371 416 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 ZBTB44Q8NCP5 570 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 MED28Q9H204 178 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 SLCO5A1Q9H2Y9 848 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 CRLF2Q9HC73 371 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 BABAM2Q9NXR7 383 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 OSGIN1Q9UJX0 560 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 AMDHD2Q9Y303 409 aa9.21□□□□□ -0.93
USP54-201ENST00000339859 PRRC2BQ5JSZ5 2229 aaKnown RBP9.21□□□□□ -0.94
USP54-201ENST00000339859 OR6C6A6NF89 314 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 ZNF44P15621 663 aa9.21□□□□□ -0.94
USP54-201ENST00000339859 UGT2B10P36537 528 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms