RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 UFD1Q92890 307 aa13.85□□□□□ -0.19
LIMS1-202ENST00000338045 NUAK2Q9H093 628 aa13.85□□□□□ -0.19
LIMS1-202ENST00000338045 MARCH7Q9H992 704 aa13.85□□□□□ -0.19
LIMS1-202ENST00000338045 BABAM2Q9NXR7 383 aa13.85□□□□□ -0.19
LIMS1-202ENST00000338045 ZMIZ1Q9ULJ6 1067 aa13.85□□□□□ -0.19
LIMS1-202ENST00000338045 SF3B6Q9Y3B4 125 aaKnown RBP13.85□□□□□ -0.19
LIMS1-202ENST00000338045 OR5H15A6NDH6 313 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 TRABD2BA6NFA1 517 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 GJE1A6NN92 205 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 FAM171A2A8MVW0 826 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 ZNF814B7Z6K7 855 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 NPIPA5E9PKD4 350 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 GPX5O75715 221 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 PRKAR1AP10644 381 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 CAPZA2P47755 286 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 MFAP5Q13361 173 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 SLC16A9Q7RTY1 509 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 YRDCQ86U90 279 aaKnown RBP13.84□□□□□ -0.19
LIMS1-202ENST00000338045 ZNF511Q8NB15 262 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 OR14L1PQ8NHC6 308 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 DYNC2LI1Q8TCX1 351 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 KCNE4Q8WWG9 221 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 CHCHD6Q9BRQ6 235 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 CENPOQ9BU64 300 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 MFRPQ9BY79 579 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 HES7Q9BYE0 225 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 ZNF552Q9H707 407 aaPredicted RBP13.84□□□□□ -0.19
LIMS1-202ENST00000338045 PAIP2BQ9ULR5 123 aaKnown RBP13.84□□□□□ -0.19
LIMS1-202ENST00000338045 NPIPA1Q9UND3 350 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 STUB1Q9UNE7 303 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 B9D1Q9UPM9 204 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 MED12Q93074 2177 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 IGLV1-36A0A0B4J1U3 117 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 MT-ND5P03915 603 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 TGFBR1P36897 503 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 CENPAP49450 140 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 HCCSP53701 268 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 HSF2Q03933 536 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 TOMM20Q15388 145 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 SOWAHCQ53LP3 525 aaPredicted RBP13.84□□□□□ -0.19
LIMS1-202ENST00000338045 SULF2Q8IWU5 870 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 SYS1Q8N2H4 156 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 RFLNBQ8N5W9 214 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 GIMAP1Q8WWP7 306 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 SLC39A7Q92504 469 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 HAS2Q92819 552 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 ZHX1-C8orf76Q96EF9 292 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 KLHL15Q96M94 604 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 OXGR1Q96P68 337 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 KCNK17Q96T54 332 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 TSPAN10Q9H1Z9 355 aaPredicted RBP13.84□□□□□ -0.19
LIMS1-202ENST00000338045 ZNF703Q9H7S9 590 aaPredicted RBP13.84□□□□□ -0.19
LIMS1-202ENST00000338045 KLHL13Q9P2N7 655 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 COPS3Q9UNS2 423 aa13.84□□□□□ -0.19
LIMS1-202ENST00000338045 NCKAP5O14513 1909 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 A0A0J9YW62 118 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 LOC100506127A0A0U1RQW1 187 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 A6NL46 340 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 DNPH1O43598 174 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 TRAF3IP2O43734 574 aaPredicted RBP13.83□□□□□ -0.2
LIMS1-202ENST00000338045 NME2P1O60361 137 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 EIF1BO60739 113 aaKnown RBP13.83□□□□□ -0.2
LIMS1-202ENST00000338045 SP1P08047 785 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 NME2P22392 152 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 GDF1P27539 372 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 GABRA5P31644 462 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 BLVRAP53004 296 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 RPS3AP61247 264 aaKnown RBP13.83□□□□□ -0.2
LIMS1-202ENST00000338045 ACTA2P62736 377 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 ACTG2P63267 376 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 TUBA1BP68363 451 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 GPR50Q13585 617 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 CDONQ4KMG0 1287 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 CD200R1LQ6Q8B3 271 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 USP43Q70EL4 1123 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 TUBA1AQ71U36 451 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 KLBQ86Z14 1044 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 WDFY1Q8IWB7 410 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 UEVLDQ8IX04 471 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 TXNDC15Q96J42 360 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 DCSTAMPQ9H295 470 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 MED29Q9NX70 200 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 FBXO9Q9UK97 447 aaPredicted RBP13.83□□□□□ -0.2
LIMS1-202ENST00000338045 POLHQ9Y253 713 aa13.83□□□□□ -0.2
LIMS1-202ENST00000338045 KLF13Q9Y2Y9 288 aaPredicted RBP13.83□□□□□ -0.2
LIMS1-202ENST00000338045 CTLA4P16410 223 aa13.82□□□□□ -0.2
LIMS1-202ENST00000338045 CRABP1P29762 137 aa13.82□□□□□ -0.2
LIMS1-202ENST00000338045 GFRA1P56159 465 aa13.82□□□□□ -0.2
LIMS1-202ENST00000338045 CSNK2A1P68400 391 aaPredicted RBP13.82□□□□□ -0.2
LIMS1-202ENST00000338045 CDC20Q12834 499 aa13.82□□□□□ -0.2
LIMS1-202ENST00000338045 VASNQ6EMK4 673 aa13.82□□□□□ -0.2
LIMS1-202ENST00000338045 TMEM225Q6GV28 225 aa13.82□□□□□ -0.2
LIMS1-202ENST00000338045 SLC25A25Q6KCM7 469 aa13.82□□□□□ -0.2
LIMS1-202ENST00000338045 ASB18Q6ZVZ8 466 aa13.82□□□□□ -0.2
LIMS1-202ENST00000338045 VASH1Q7L8A9 365 aaPredicted RBP13.82□□□□□ -0.2
LIMS1-202ENST00000338045 GGNQ86UU5 652 aa13.82□□□□□ -0.2
LIMS1-202ENST00000338045 C4orf36Q96KX1 117 aa13.82□□□□□ -0.2
LIMS1-202ENST00000338045 MNTQ99583 582 aa13.82□□□□□ -0.2
LIMS1-202ENST00000338045 RNF167Q9H6Y7 350 aa13.82□□□□□ -0.2
LIMS1-202ENST00000338045 TRIM36Q9NQ86 728 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms