RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 CYB5R2Q6BCY4 276 aa16.88■□□□□ 0.29
LIME1-201ENST00000309546 CALHM3Q86XJ0 350 aa16.88■□□□□ 0.29
LIME1-201ENST00000309546 OR6X1Q8NH79 312 aa16.88■□□□□ 0.29
LIME1-201ENST00000309546 ZNF566Q969W8 418 aa16.88■□□□□ 0.29
LIME1-201ENST00000309546 KCNK17Q96T54 332 aa16.88■□□□□ 0.29
LIME1-201ENST00000309546 PRSS27Q9BQR3 290 aa16.88■□□□□ 0.29
LIME1-201ENST00000309546 SLC19A3Q9BZV2 496 aa16.88■□□□□ 0.29
LIME1-201ENST00000309546 MYOZ1Q9NP98 299 aaPredicted RBP16.88■□□□□ 0.29
LIME1-201ENST00000309546 MRGBPQ9NV56 204 aa16.88■□□□□ 0.29
LIME1-201ENST00000309546 GLTPQ9NZD2 209 aa16.88■□□□□ 0.29
LIME1-201ENST00000309546 LOC100653049A0A140TA62 436 aa16.87■□□□□ 0.29
LIME1-201ENST00000309546 LOC390937A0A1W2PQ73 354 aa16.87■□□□□ 0.29
LIME1-201ENST00000309546 VWC2LB2RUY7 222 aa16.87■□□□□ 0.29
LIME1-201ENST00000309546 KRT34O76011 436 aa16.87■□□□□ 0.29
LIME1-201ENST00000309546 ZNF14P17017 642 aaPredicted RBP16.87■□□□□ 0.29
LIME1-201ENST00000309546 RAB1AP62820 205 aa16.87■□□□□ 0.29
LIME1-201ENST00000309546 ZP4Q12836 540 aa16.87■□□□□ 0.29
LIME1-201ENST00000309546 LRRC23Q53EV4 343 aaPredicted RBP16.87■□□□□ 0.29
LIME1-201ENST00000309546 COQ5Q5HYK3 327 aa16.87■□□□□ 0.29
LIME1-201ENST00000309546 CGB2Q6NT52 195 aa16.87■□□□□ 0.29
LIME1-201ENST00000309546 ERICH5Q6P6B1 374 aa16.87■□□□□ 0.29
LIME1-201ENST00000309546 ZNF627Q7L945 461 aa16.87■□□□□ 0.29
LIME1-201ENST00000309546 CDK20Q8IZL9 346 aa16.87■□□□□ 0.29
LIME1-201ENST00000309546 ZCCHC24Q8N2G6 241 aaKnown RBP16.87■□□□□ 0.29
LIME1-201ENST00000309546 PFN4Q8NHR9 129 aa16.87■□□□□ 0.29
LIME1-201ENST00000309546 TMEM54Q969K7 222 aa16.87■□□□□ 0.29
LIME1-201ENST00000309546 FOXN4Q96NZ1 517 aa16.87■□□□□ 0.29
LIME1-201ENST00000309546 ZNF426Q9BUY5 554 aa16.87■□□□□ 0.29
LIME1-201ENST00000309546 SAR1AQ9NR31 198 aa16.87■□□□□ 0.29
LIME1-201ENST00000309546 ZNF224Q9NZL3 707 aa16.87■□□□□ 0.29
LIME1-201ENST00000309546 BAG5Q9UL15 447 aa16.87■□□□□ 0.29
LIME1-201ENST00000309546 CMAHPQ9Y471 501 aa16.87■□□□□ 0.29
LIME1-201ENST00000309546 BLOC1S5-TXNDC5H3BN57 136 aa16.86■□□□□ 0.29
LIME1-201ENST00000309546 UBL3O95164 117 aa16.86■□□□□ 0.29
LIME1-201ENST00000309546 ASAH2BP0C7U1 165 aa16.86■□□□□ 0.29
LIME1-201ENST00000309546 PATE4P0C8F1 98 aa16.86■□□□□ 0.29
LIME1-201ENST00000309546 NR4A1P22736 598 aa16.86■□□□□ 0.29
LIME1-201ENST00000309546 GALK2Q01415 458 aa16.86■□□□□ 0.29
LIME1-201ENST00000309546 GKAP1Q5VSY0 366 aaPredicted RBP16.86■□□□□ 0.29
LIME1-201ENST00000309546 NKAIN4Q8IVV8 208 aa16.86■□□□□ 0.29
LIME1-201ENST00000309546 TMEM255BQ8WV15 326 aa16.86■□□□□ 0.29
LIME1-201ENST00000309546 SLC25A44Q96H78 314 aaPredicted RBP16.86■□□□□ 0.29
LIME1-201ENST00000309546 DOK1Q99704 481 aa16.86■□□□□ 0.29
LIME1-201ENST00000309546 BPESC1Q9GZL8 116 aa16.86■□□□□ 0.29
LIME1-201ENST00000309546 MEPEQ9NQ76 525 aaPredicted RBP16.86■□□□□ 0.29
LIME1-201ENST00000309546 FBXO9Q9UK97 447 aaPredicted RBP16.86■□□□□ 0.29
LIME1-201ENST00000309546 SPEF1Q9Y4P9 236 aa16.86■□□□□ 0.29
LIME1-201ENST00000309546 IGHV4-61A0A0C4DH41 118 aa16.85■□□□□ 0.29
LIME1-201ENST00000309546 TMEM129A0AVI4 362 aa16.85■□□□□ 0.29
LIME1-201ENST00000309546 MCIDASD6RGH6 385 aa16.85■□□□□ 0.29
LIME1-201ENST00000309546 BCL10O95999 233 aa16.85■□□□□ 0.29
LIME1-201ENST00000309546 IFNA2P01563 188 aa16.85■□□□□ 0.29
LIME1-201ENST00000309546 F13BP05160 661 aa16.85■□□□□ 0.29
LIME1-201ENST00000309546 APEHP13798 732 aaKnown RBP16.85■□□□□ 0.29
LIME1-201ENST00000309546 OR1E2P47887 323 aa16.85■□□□□ 0.29
LIME1-201ENST00000309546 GZMKP49863 264 aa16.85■□□□□ 0.29
LIME1-201ENST00000309546 UGT2B15P54855 530 aa16.85■□□□□ 0.29
LIME1-201ENST00000309546 CLRN1P58418 232 aa16.85■□□□□ 0.29
LIME1-201ENST00000309546 RPL18Q07020 188 aaKnown RBP16.85■□□□□ 0.29
LIME1-201ENST00000309546 PIN1Q13526 163 aaPredicted RBP16.85■□□□□ 0.29
LIME1-201ENST00000309546 RAB39AQ14964 217 aa16.85■□□□□ 0.29
LIME1-201ENST00000309546 PIWIL3Q7Z3Z3 882 aaKnown RBP16.85■□□□□ 0.29
LIME1-201ENST00000309546 SKA3Q8IX90 412 aa16.85■□□□□ 0.29
LIME1-201ENST00000309546 PCYOX1LQ8NBM8 494 aa16.85■□□□□ 0.29
LIME1-201ENST00000309546 C10orf82Q8WW14 230 aa16.85■□□□□ 0.29
LIME1-201ENST00000309546 NEU4Q8WWR8 484 aaPredicted RBP16.85■□□□□ 0.29
LIME1-201ENST00000309546 ZNF75AQ96N20 296 aa16.85■□□□□ 0.29
LIME1-201ENST00000309546 TPK1Q9H3S4 243 aa16.85■□□□□ 0.29
LIME1-201ENST00000309546 CHODLQ9H9P2 273 aa16.85■□□□□ 0.29
LIME1-201ENST00000309546 GID8Q9NWU2 228 aa16.85■□□□□ 0.29
LIME1-201ENST00000309546 CAPN7Q9Y6W3 813 aa16.85■□□□□ 0.29
LIME1-201ENST00000309546 MALRD1Q5VYJ5 2156 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 RTTNQ86VV8 2226 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 A0A1W2PRG6 482 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 FAM220BPB1ANY3 271 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 DHHO43323 396 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 OR7A10O76100 309 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 OR5F1O95221 314 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 NPPAP01160 153 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 IFNA14P01570 189 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 IGHG1P01857 330 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 MT-ND1P03886 318 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 ADRA2AP08913 450 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 PGA4P0DJD7 388 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 PGA3P0DJD8 388 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 DAOP14920 347 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 LSP1P33241 339 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 PODNL1Q6PEZ8 512 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 CXXC5Q7LFL8 322 aaKnown RBP16.84■□□□□ 0.29
LIME1-201ENST00000309546 SLC22A24Q8N4F4 322 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 FGFBP3Q8TAT2 258 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 TMEM239Q8WW34 195 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 MRPL24Q96A35 216 aaKnown RBP16.84■□□□□ 0.29
LIME1-201ENST00000309546 SGTBQ96EQ0 304 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 TPD52L3Q96J77 140 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 ZNF583Q96ND8 569 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 SH3GL3Q99963 347 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 SYT3Q9BQG1 590 aa16.84■□□□□ 0.29
LIME1-201ENST00000309546 MRPL37Q9BZE1 423 aaKnown RBP16.84■□□□□ 0.29
LIME1-201ENST00000309546 DENND2DQ9H6A0 471 aaPredicted RBP16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms