RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 DNAJB6O75190 326 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 RAB40ALP0C0E4 278 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 GABRR2P28476 465 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 CD1CP29017 333 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 SKP2Q13309 424 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 INPP5JQ15735 1006 aaPredicted RBP12.28□□□□□ -0.44
SKA3-201ENST00000298260 OR2B11Q5JQS5 317 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 KRBOX4Q5JUW0 171 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 NKAPLQ5M9Q1 402 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 ATPAF1Q5TC12 328 aaPredicted RBP12.28□□□□□ -0.44
SKA3-201ENST00000298260 OR52W1Q6IF63 320 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 SLC8B1Q6J4K2 584 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 C3orf33Q6P1S2 294 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 FIP1L1Q6UN15 594 aaKnown RBP12.28□□□□□ -0.44
SKA3-201ENST00000298260 UQCC3Q6UW78 93 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 PPP1R3BQ86XI6 285 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 EID2Q8N6I1 236 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 OR56A1Q8NGH5 318 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 OR5M8Q8NGP6 311 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 RAB40AQ8WXH6 277 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 DNAJA3Q96EY1 480 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 PARP12Q9H0J9 701 aaKnown RBP12.28□□□□□ -0.44
SKA3-201ENST00000298260 PRR13Q9NZ81 148 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 SLC25A13Q9UJS0 675 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 CARHSP1Q9Y2V2 147 aaKnown RBP12.28□□□□□ -0.44
SKA3-201ENST00000298260 DOCK9Q9BZ29 2069 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 XRCC3O43542 346 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 CTAG2O75638 210 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 DCNP07585 359 aaKnown RBP12.28□□□□□ -0.44
SKA3-201ENST00000298260 LAMP2P13473 410 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 LAG3P18627 525 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 CSNK2A2P19784 350 aaPredicted RBP12.28□□□□□ -0.44
SKA3-201ENST00000298260 AGTR1P30556 359 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 VASPP50552 380 aaPredicted RBP12.28□□□□□ -0.44
SKA3-201ENST00000298260 EPHB3P54753 998 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 COL19A1Q14993 1142 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 PRAMEF17Q5VTA0 474 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 MFSD12Q6NUT3 480 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 ACOT7LQ6ZUV0 252 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 GAREM2Q75VX8 874 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 C12orf40Q86WS4 652 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 GABRG1Q8N1C3 465 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 PFDN5Q99471 154 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 ELF4Q99607 663 aaPredicted RBP12.28□□□□□ -0.44
SKA3-201ENST00000298260 PCDHGA1Q9Y5H4 931 aa12.28□□□□□ -0.44
SKA3-201ENST00000298260 TICRRQ7Z2Z1 1910 aa12.27□□□□□ -0.44
SKA3-201ENST00000298260 TMEM72A0PK05 275 aa12.27□□□□□ -0.44
SKA3-201ENST00000298260 C1orf196B1AJZ1 125 aa12.27□□□□□ -0.44
SKA3-201ENST00000298260 LYPD3O95274 346 aa12.27□□□□□ -0.44
SKA3-201ENST00000298260 BCL6P41182 706 aa12.27□□□□□ -0.44
SKA3-201ENST00000298260 CSNK1G2P78368 415 aa12.27□□□□□ -0.44
SKA3-201ENST00000298260 PLAURQ03405 335 aa12.27□□□□□ -0.44
SKA3-201ENST00000298260 MLC1Q15049 377 aa12.27□□□□□ -0.44
SKA3-201ENST00000298260 MPPED2Q15777 294 aa12.27□□□□□ -0.44
SKA3-201ENST00000298260 ARHGAP40Q5TG30 622 aa12.27□□□□□ -0.44
SKA3-201ENST00000298260 OR10K2Q6IF99 312 aa12.27□□□□□ -0.44
SKA3-201ENST00000298260 ZAR1Q86SH2 424 aa12.27□□□□□ -0.44
SKA3-201ENST00000298260 CDK20Q8IZL9 346 aa12.27□□□□□ -0.44
SKA3-201ENST00000298260 CLEC1AQ8NC01 280 aa12.27□□□□□ -0.44
SKA3-201ENST00000298260 ZNF461Q8TAF7 563 aa12.27□□□□□ -0.44
SKA3-201ENST00000298260 HIST1H2BAQ96A08 127 aa12.27□□□□□ -0.44
SKA3-201ENST00000298260 NRIP2Q9BQI9 281 aa12.27□□□□□ -0.44
SKA3-201ENST00000298260 ADAP2Q9NPF8 381 aa12.27□□□□□ -0.44
SKA3-201ENST00000298260 LSM7Q9UK45 103 aaKnown RBP12.27□□□□□ -0.44
SKA3-201ENST00000298260 MED31Q9Y3C7 131 aa12.27□□□□□ -0.44
SKA3-201ENST00000298260 A0A1W2PPV9 198 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 UBE2CO00762 179 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 OR2F2O95006 317 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 RAB3DO95716 219 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 GPANK1O95872 356 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 SFTA3P0C7M3 94 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 OR2T7P0C7T2 308 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 S100PP25815 95 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 CST5P28325 142 aaPredicted RBP12.27□□□□□ -0.45
SKA3-201ENST00000298260 GPR1P46091 355 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 POU3F4P49335 361 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 OR2F1Q13607 317 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 FHL1Q13642 323 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 MST1LQ2TV78 715 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 TRMT12Q53H54 448 aaKnown RBP12.27□□□□□ -0.45
SKA3-201ENST00000298260 ZNF813Q6ZN06 617 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 ZNF627Q7L945 461 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 CACUL1Q86Y37 369 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 TMIEQ8NEW7 156 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 OR2T27Q8NH04 317 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 OVCA2Q8WZ82 227 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 ARL11Q969Q4 196 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 PPP1R14AQ96A00 147 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 TMEM106AQ96A25 262 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 MOAP1Q96BY2 351 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 RRNAD1Q96FB5 475 aaKnown RBP12.27□□□□□ -0.45
SKA3-201ENST00000298260 ZC3H10Q96K80 434 aaKnown RBP12.27□□□□□ -0.45
SKA3-201ENST00000298260 OR52A5Q9H2C5 316 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 PRSS16Q9NQE7 514 aa12.27□□□□□ -0.45
SKA3-201ENST00000298260 WASH3PC4AMC7 463 aa12.26□□□□□ -0.45
SKA3-201ENST00000298260 ITGB2P05107 769 aa12.26□□□□□ -0.45
SKA3-201ENST00000298260 CSF1P09603 554 aa12.26□□□□□ -0.45
SKA3-201ENST00000298260 OR8U8P0C7N1 319 aa12.26□□□□□ -0.45
SKA3-201ENST00000298260 ZNF14P17017 642 aaPredicted RBP12.26□□□□□ -0.45
SKA3-201ENST00000298260 HIST1H1TP22492 207 aaPredicted RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms