RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 TAS2R31P59538 309 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 SSX9Q7RTT3 188 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 PLPP7Q8NBV4 271 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 SMCO4Q9NRQ5 59 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 TMPRSS11DO60235 418 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 LIMS3P0CW19 117 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 LIMS4P0CW20 117 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 S100PP25815 95 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 SMAD2Q15796 467 aaKnown RBP14.12□□□□□ -0.15
SHH-201ENST00000297261 KDM8Q8N371 416 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 ANKRD53Q8N9V6 530 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 GPATCH2Q9NW75 528 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 FGF9P31371 208 aaPredicted RBP14.12□□□□□ -0.15
SHH-201ENST00000297261 MVDP53602 400 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 SGPP2Q8IWX5 399 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 IL17RCQ8NAC3 791 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 SUMF2Q8NBJ7 301 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 OR2AK2Q8NG84 335 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 OR5M1Q8NGP8 315 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 ZFPM2Q8WW38 1151 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 RNF170Q96K19 258 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 HIST1H2AAQ96QV6 131 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 TGIF2Q9GZN2 237 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 MIXL1Q9H2W2 232 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 NCDNQ9UBB6 729 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 REV1Q9UBZ9 1251 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 KIF25Q9UIL4 384 aa14.12□□□□□ -0.15
SHH-201ENST00000297261 UBE2J1Q9Y385 318 aaPredicted RBP14.12□□□□□ -0.15
SHH-201ENST00000297261 CHRM4P08173 479 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 CPT2P23786 658 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 EMP2P54851 167 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 TAS2R20P59543 309 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 TCEAL6Q6IPX3 200 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 OR13C9Q8NGT0 318 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 PGAM5Q96HS1 289 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 STARD5Q9NSY2 213 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 ZNF217O75362 1048 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 PMS2P2O95744 297 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 PPP2CBP62714 309 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 PPP2CAP67775 309 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 PAPD4Q6PIY7 484 aaKnown RBP14.11□□□□□ -0.15
SHH-201ENST00000297261 TRAPPC6BQ86SZ2 158 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 OR52R1Q8NGF1 315 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 ABHD1Q96SE0 405 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 OR52A5Q9H2C5 316 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 IFT22Q9H7X7 185 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 SLC22A23A1A5C7 686 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 SULT1B1O43704 296 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 CAPZA1P52907 286 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 LINC00303Q3SY05 128 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 ALKBH2Q6NS38 261 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 C3orf33Q6P1S2 294 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 NIPAL3Q6P499 406 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 AVL9Q8NBF6 648 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 OR1E3Q8WZA6 343 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 FAM3DQ96BQ1 224 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 OR5B12Q96R08 314 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 WDR77Q9BQA1 342 aaPredicted RBP14.11□□□□□ -0.15
SHH-201ENST00000297261 SELENOIQ9C0D9 397 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 ZNF304Q9HCX3 659 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 DLL4Q9NR61 685 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 C2orf42Q9NWW7 574 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 LRFN1Q9P244 771 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 TRAV20A0A0B4J274 112 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 RDH16O75452 317 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 IFNA5P01569 189 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 PVRP15151 417 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 BATFQ16520 125 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 PRR22Q8IZ63 422 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 DUSP18Q8NEJ0 188 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 CHAC2Q8WUX2 184 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 POFUT1Q9H488 388 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 TESQ9UGI8 421 aaKnown RBP14.11□□□□□ -0.15
SHH-201ENST00000297261 PRELID3BQ9Y3B1 194 aa14.11□□□□□ -0.15
SHH-201ENST00000297261 A0A1B0GUH1 482 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 CPED1A4D0V7 1026 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 OR5H14A6NHG9 310 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 ZP3P21754 424 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 MAOBP27338 520 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 CD80P33681 288 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 NR0B1P51843 470 aaKnown RBP14.1□□□□□ -0.15
SHH-201ENST00000297261 PPA1Q15181 289 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 GLYATL3Q5SZD4 288 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 LIPNQ5VXI9 398 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 C12orf73Q69YU5 71 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 TMEM81Q6P7N7 255 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 OR4K17Q8NGC6 315 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 LINC00052Q96N35 136 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 GFOD1Q9NXC2 390 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 EFEMP2O95967 443 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 CFIP05156 583 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 TMEM225BP0DP42 221 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 UBL4AP11441 157 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 CPMP14384 443 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 SPI1P17947 270 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 CLRN1P58418 232 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 OR2B8PP59922 312 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 EIF2S3LQ2VIR3 472 aaKnown RBP14.1□□□□□ -0.15
SHH-201ENST00000297261 CDONQ4KMG0 1287 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 PDSS1Q5T2R2 415 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms