RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 CD247P20963 164 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 NR4A1P22736 598 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 NR4A2P43354 598 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 CAPZA2P47755 286 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 GIPRP48546 466 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 PPOXP50336 477 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 CRYBA2P53672 197 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 NPRL3Q12980 569 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 ZNF74Q16587 644 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 VMACQ2NL98 169 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 ENTPD8Q5MY95 495 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 PODNL1Q6PEZ8 512 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 REC114Q7Z4M0 266 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 PATL1Q86TB9 770 aaKnown RBP8.41□□□□□ -1.06
VPS41-201ENST00000265745 SLC30A8Q8IWU4 369 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 OR6N1Q8NGY5 312 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 OR6X1Q8NH79 312 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 ADAMTS16Q8TE57 1224 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 TAMM41Q96BW9 452 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 ZNF426Q9BUY5 554 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 RAB1BQ9H0U4 201 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 PCDHAC1Q9H158 963 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 NOX3Q9HBY0 568 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 MYOZ1Q9NP98 299 aaPredicted RBP8.41□□□□□ -1.06
VPS41-201ENST00000265745 B3GAT2Q9NPZ5 323 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 TMEM160Q9NX00 188 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 TAS2R5Q9NYW4 299 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 CDC42EP3Q9UKI2 254 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 POFUT2Q9Y2G5 429 aa8.41□□□□□ -1.06
VPS41-201ENST00000265745 IGHV4-61A0A0C4DH41 118 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 TRAPPC13A5PLN9 417 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 CPSF4LA6NMK7 179 aaKnown RBP8.4□□□□□ -1.06
VPS41-201ENST00000265745 hCG_2039718K7EN88 272 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 SERPINI2O75830 405 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 OR6A2O95222 327 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 CH25HO95992 272 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 IGFBP1P08833 259 aaPredicted RBP8.4□□□□□ -1.06
VPS41-201ENST00000265745 FAM157CP0CG43 387 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 CD79AP11912 226 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 ZNF35P13682 527 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 B4GALT1P15291 398 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 ZNF14P17017 642 aaPredicted RBP8.4□□□□□ -1.06
VPS41-201ENST00000265745 PCGF2P35227 344 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 GZMKP49863 264 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 BIDP55957 195 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 PIGFQ07326 219 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 ZP4Q12836 540 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 CYLC2Q14093 348 aaPredicted RBP8.4□□□□□ -1.06
VPS41-201ENST00000265745 DAG1Q14118 895 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 GSG1Q2KHT4 349 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 INTS11Q5TA45 600 aaKnown RBP8.4□□□□□ -1.06
VPS41-201ENST00000265745 NANOGP8Q6NSW7 305 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 TTC33Q6PID6 262 aaPredicted RBP8.4□□□□□ -1.06
VPS41-201ENST00000265745 LRFN4Q6PJG9 635 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 ZNF813Q6ZN06 617 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 SLC35D2Q76EJ3 337 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 CCDC80Q76M96 950 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 SPATA21Q7Z572 469 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 SNX32Q86XE0 403 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 ZCCHC24Q8N2G6 241 aaKnown RBP8.4□□□□□ -1.06
VPS41-201ENST00000265745 SVOPLQ8N434 492 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 LRRC17Q8N6Y2 441 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 CELF2-AS1Q8N7Q2 184 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 ZNF540Q8NDQ6 660 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 VANGL1Q8TAA9 524 aaPredicted RBP8.4□□□□□ -1.06
VPS41-201ENST00000265745 MPP4Q96JB8 637 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 FOXB1Q99853 325 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 PIMREGQ9BSJ6 248 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 ULBP2Q9BZM5 246 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 SLC19A3Q9BZV2 496 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 DENND2DQ9H6A0 471 aaPredicted RBP8.4□□□□□ -1.06
VPS41-201ENST00000265745 NANOGQ9H9S0 305 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 ZNF224Q9NZL3 707 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 SLC7A7Q9UM01 511 aa8.4□□□□□ -1.06
VPS41-201ENST00000265745 SH3PXD2BA1X283 911 aa8.39□□□□□ -1.07
VPS41-201ENST00000265745 C11orf98E9PRG8 122 aa8.39□□□□□ -1.07
VPS41-201ENST00000265745 FXYD1O00168 92 aa8.39□□□□□ -1.07
VPS41-201ENST00000265745 LMX1BO60663 402 aa8.39□□□□□ -1.07
VPS41-201ENST00000265745 STAMBPO95630 424 aa8.39□□□□□ -1.07
VPS41-201ENST00000265745 BPNT1O95861 308 aa8.39□□□□□ -1.07
VPS41-201ENST00000265745 ASAH2BP0C7U1 165 aa8.39□□□□□ -1.07
VPS41-201ENST00000265745 CSNK1A1P48729 337 aa8.39□□□□□ -1.07
VPS41-201ENST00000265745 EVX1P49640 407 aa8.39□□□□□ -1.07
VPS41-201ENST00000265745 RAB1AP62820 205 aa8.39□□□□□ -1.07
VPS41-201ENST00000265745 GGTLC2Q14390 218 aa8.39□□□□□ -1.07
VPS41-201ENST00000265745 CARTPTQ16568 116 aa8.39□□□□□ -1.07
VPS41-201ENST00000265745 MSMPQ1L6U9 139 aa8.39□□□□□ -1.07
VPS41-201ENST00000265745 TRMT5Q32P41 509 aaKnown RBP8.39□□□□□ -1.07
VPS41-201ENST00000265745 RABL3Q5HYI8 236 aa8.39□□□□□ -1.07
VPS41-201ENST00000265745 KRT80Q6KB66 452 aa8.39□□□□□ -1.07
VPS41-201ENST00000265745 PIWIL3Q7Z3Z3 882 aaKnown RBP8.39□□□□□ -1.07
VPS41-201ENST00000265745 CALHM3Q86XJ0 350 aa8.39□□□□□ -1.07
VPS41-201ENST00000265745 OR8J3Q8NGG0 315 aa8.39□□□□□ -1.07
VPS41-201ENST00000265745 SLC26A7Q8TE54 656 aa8.39□□□□□ -1.07
VPS41-201ENST00000265745 NEU4Q8WWR8 484 aaPredicted RBP8.39□□□□□ -1.07
VPS41-201ENST00000265745 RASSF5Q8WWW0 418 aa8.39□□□□□ -1.07
VPS41-201ENST00000265745 TMEM54Q969K7 222 aa8.39□□□□□ -1.07
VPS41-201ENST00000265745 LRRC58Q96CX6 371 aa8.39□□□□□ -1.07
VPS41-201ENST00000265745 MSI2Q96DH6 328 aaKnown RBP8.39□□□□□ -1.07
VPS41-201ENST00000265745 SH3GL1Q99961 368 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms