RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 CARMIL3Q8ND23 1372 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 TTC41PQ6P2S7 1318 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 MROH5Q6ZUA9 1318 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 A0A075B6Q4 140 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 TRAV40A0A0B4J280 105 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 GOLGA8OA6NCC3 632 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 NCF1BA6NI72 391 aaPredicted RBP1.76□□□□□ -2.13
CD44-239ENST00000639002 NCF1CA8MVU1 366 aaPredicted RBP1.76□□□□□ -2.13
CD44-239ENST00000639002 GOLGA8NF8WBI6 632 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 RPL36A-HNRNPH2H7BZ11 118 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 POLR2DO15514 142 aaKnown RBP1.76□□□□□ -2.13
CD44-239ENST00000639002 RS1O15537 224 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 MED7O43513 233 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 LANCL1O43813 399 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 SURF6O75683 361 aaKnown RBP1.76□□□□□ -2.13
CD44-239ENST00000639002 FLOT1O75955 427 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 TM7SF2O76062 418 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 CA1P00915 261 aaPredicted RBP1.76□□□□□ -2.13
CD44-239ENST00000639002 RALBP11234 206 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 ANXA8P13928 327 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 POLR2EP19388 210 aaKnown RBP1.76□□□□□ -2.13
CD44-239ENST00000639002 TBXA2RP21731 343 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 FGF9P31371 208 aaPredicted RBP1.76□□□□□ -2.13
CD44-239ENST00000639002 RFC4P35249 363 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 NUP62P37198 522 aaPredicted RBP1.76□□□□□ -2.13
CD44-239ENST00000639002 HPCAL1P37235 193 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 LEPP41159 167 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 EPS15P42566 896 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 ACADVLP49748 655 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 HSPA2P54652 639 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 CBX1P83916 185 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 TNFRSF17Q02223 184 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 IDI1Q13907 227 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 STK11Q15831 433 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 PRSS8Q16651 343 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 UBE2SQ16763 222 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 SAMD4BQ5PRF9 694 aaKnown RBP1.76□□□□□ -2.13
CD44-239ENST00000639002 ANXA8L1Q5VT79 327 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 PRAMEF20Q5VT98 475 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 TPGS2Q68CL5 300 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 TMEM225Q6GV28 225 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 NANOGP8Q6NSW7 305 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 ZNF880Q6PDB4 577 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 EFL1Q7Z2Z2 1120 aaKnown RBP1.76□□□□□ -2.13
CD44-239ENST00000639002 MOB3BQ86TA1 216 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 PAQR7Q86WK9 346 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 SLC22A9Q8IVM8 553 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 ZDHHC21Q8IVQ6 265 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 SLC38A6Q8IZM9 456 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 CLEC4FQ8N1N0 589 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 UBE2J2Q8N2K1 259 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 SYT14Q8NB59 555 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 BHLHE23Q8NDY6 225 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 STEAP2Q8NFT2 490 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 OR52P1PQ8NH57 321 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 HTR3CQ8WXA8 447 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 EFHD2Q96C19 240 aaPredicted RBP1.76□□□□□ -2.13
CD44-239ENST00000639002 C4orf36Q96KX1 117 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 MTG1Q9BT17 334 aaPredicted RBP1.76□□□□□ -2.13
CD44-239ENST00000639002 NDFIP1Q9BT67 221 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 ALG12Q9BV10 488 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 XKR8Q9H6D3 395 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 SUDS3Q9H7L9 328 aaPredicted RBP1.76□□□□□ -2.13
CD44-239ENST00000639002 RPRD1BQ9NQG5 326 aaKnown RBP1.76□□□□□ -2.13
CD44-239ENST00000639002 GLRX2Q9NS18 164 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 ETNK2Q9NVF9 386 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 ZMAT5Q9UDW3 170 aaKnown RBP1.76□□□□□ -2.13
CD44-239ENST00000639002 ZNF229Q9UJW7 825 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 TMCO1Q9UM00 188 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 CLEC4AQ9UMR7 237 aa1.76□□□□□ -2.13
CD44-239ENST00000639002 PLEKHG2Q9H7P9 1386 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP1.75□□□□□ -2.13
CD44-239ENST00000639002 SH3TC1Q8TE82 1336 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 CEP350Q5VT06 3117 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 LINC00854A0A1B0GVQ3 168 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 FAM240BA0A1B0GVZ2 78 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 G3V4G9 280 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 GOLGA8SH3BPF8 625 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 WRBO00258 174 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 DCTN6O00399 190 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 XPO1O14980 1071 aaKnown RBP1.75□□□□□ -2.13
CD44-239ENST00000639002 AGPAT2O15120 278 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 ZNF208O43345 1280 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 UGT1A9O60656 530 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 SERPINA3P01011 423 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 CCDC172P0C7W6 258 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 UBTFL6P0CB48 400 aaPredicted RBP1.75□□□□□ -2.13
CD44-239ENST00000639002 STAG3L3P0CL85 134 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 TROVE2P10155 538 aaKnown RBP eCLIP1.75□□□□□ -2.13
CD44-239ENST00000639002 DBTP11182 482 aaKnown RBP1.75□□□□□ -2.13
CD44-239ENST00000639002 POU2F1P14859 743 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 ABOP16442 354 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 IMPDH1P20839 514 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 NPY1RP25929 384 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 MAGEA1P43355 309 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 SYKP43405 635 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 CD151P48509 253 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 DAP3P51398 398 aaKnown RBP1.75□□□□□ -2.13
CD44-239ENST00000639002 AIF1P55008 147 aa1.75□□□□□ -2.13
CD44-239ENST00000639002 PKNOX1P55347 436 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms