RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 MCOLN3Q8TDD5 553 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 GATAD1Q8WUU5 269 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 FCGR1BQ92637 280 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 ABTB1Q969K4 478 aaPredicted RBP3.69□□□□□ -1.82
LINC00540-201ENST00000611481 RERGQ96A58 199 aaPredicted RBP3.69□□□□□ -1.82
LINC00540-201ENST00000611481 DCUN1D1Q96GG9 259 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 FAHD2AQ96GK7 314 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 ZNF607Q96SK3 696 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 GFI1Q99684 422 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 COQ7Q99807 217 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 CAPS2Q9BXY5 557 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 PKIBQ9C010 78 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 TMEM231Q9H6L2 316 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 NTN4Q9HB63 628 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 LPAR2Q9HBW0 351 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 DNAJC4Q9NNZ3 241 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 RBM22Q9NW64 420 aaKnown RBP eCLIP3.69□□□□□ -1.82
LINC00540-201ENST00000611481 KLHL8Q9P2G9 620 aaPredicted RBP3.69□□□□□ -1.82
LINC00540-201ENST00000611481 TXNDC16Q9P2K2 825 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 CHMP2BQ9UQN3 213 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 MMP24Q9Y5R2 645 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 U3KQK5 164 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 CSMD3Q7Z407 3707 aa3.69□□□□□ -1.82
LINC00540-201ENST00000611481 FRAS1Q86XX4 4008 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 SCN3AQ9NY46 2000 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 A0A087X0K7 114 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 NPIPA5A0A0B4J1W7 369 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 LOC390937A0A1W2PQ73 354 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 MFSD2BA6NFX1 497 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 ZNF860A6NHJ4 632 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 B4DSR2 109 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 NPIPA7E9PJI5 369 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 K7EIL1 84 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 HSPB6O14558 160 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 BUD23O43709 281 aaKnown RBP3.68□□□□□ -1.82
LINC00540-201ENST00000611481 SPOPO43791 374 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 RDH16O75452 317 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 RHBDL1O75783 438 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 KRT36O76013 467 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 ZFAND5O76080 213 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 MYO1DO94832 1006 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 LRATO95237 230 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 NSA2O95478 260 aaKnown RBP3.68□□□□□ -1.82
LINC00540-201ENST00000611481 HLA-DQB2P05538 268 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 YES1P07947 543 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 MYZAPP0CAP1 466 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 PNMA6AP0CW24 399 aaPredicted RBP3.68□□□□□ -1.82
LINC00540-201ENST00000611481 NPIPA8P0DM63 369 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 KRT3P12035 628 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 RPA2P15927 270 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 MPZP25189 248 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 CDK9P50750 372 aaKnown RBP3.68□□□□□ -1.82
LINC00540-201ENST00000611481 DOC2AQ14183 400 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 ZSWIM7Q19AV6 140 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 ZNF658BQ4V348 819 aaPredicted RBP3.68□□□□□ -1.82
LINC00540-201ENST00000611481 EIPR1Q53HC9 387 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 NCR3LG1Q68D85 454 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 TRIM65Q6PJ69 517 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 ADAMTSL5Q6ZMM2 481 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 STAC2Q6ZMT1 411 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 ZNF534Q76KX8 674 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 NANOGNBQ7Z5D8 188 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 ZC3HC1Q86WB0 502 aaKnown RBP3.68□□□□□ -1.82
LINC00540-201ENST00000611481 CDKL3Q8IVW4 592 aaPredicted RBP3.68□□□□□ -1.82
LINC00540-201ENST00000611481 MUC15Q8N387 334 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 SYT14Q8NB59 555 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 OR2L3Q8NG85 312 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 OR2L8Q8NGY9 312 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 AKR7LQ8NHP1 331 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 NCLNQ969V3 563 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 RHBDF1Q96CC6 855 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 LRRC58Q96CX6 371 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 DHTKD1Q96HY7 919 aaPredicted RBP3.68□□□□□ -1.82
LINC00540-201ENST00000611481 DPH7Q9BTV6 452 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 FNDC11Q9BVV2 318 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 C1QTNF4Q9BXJ3 329 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 GPR61Q9BZJ8 451 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 EGLN1Q9GZT9 426 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 WWTR1Q9GZV5 400 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 DPAGT1Q9H3H5 408 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 PPP1R3EQ9H7J1 279 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 ROPN1Q9HAT0 212 aaPredicted RBP3.68□□□□□ -1.82
LINC00540-201ENST00000611481 GPR173Q9NS66 373 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 CYSLTR2Q9NS75 346 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 ETNK2Q9NVF9 386 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 SMOXQ9NWM0 555 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 NDUFA13Q9P0J0 144 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 ADAM22Q9P0K1 906 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 CLCF1Q9UBD9 225 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 FKBP7Q9Y680 259 aa3.68□□□□□ -1.82
LINC00540-201ENST00000611481 DNAH3Q8TD57 4116 aa3.67□□□□□ -1.82
LINC00540-201ENST00000611481 UQCRHLA0A096LP55 91 aa3.67□□□□□ -1.82
LINC00540-201ENST00000611481 A0A1B0GUS0 222 aa3.67□□□□□ -1.82
LINC00540-201ENST00000611481 TMEM129A0AVI4 362 aa3.67□□□□□ -1.82
LINC00540-201ENST00000611481 PLSCR5A0PG75 271 aa3.67□□□□□ -1.82
LINC00540-201ENST00000611481 MAGEB16A2A368 324 aa3.67□□□□□ -1.82
LINC00540-201ENST00000611481 DPRXA6NFQ7 191 aa3.67□□□□□ -1.82
LINC00540-201ENST00000611481 GOLGA6L10A6NI86 522 aa3.67□□□□□ -1.82
LINC00540-201ENST00000611481 ZNF716A6NP11 495 aa3.67□□□□□ -1.82
LINC00540-201ENST00000611481 SHISA9B4DS77 424 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms