RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 MSMPQ1L6U9 139 aa11.35□□□□□ -0.59
RPS28-204ENST00000602140 GSG1Q2KHT4 349 aa11.35□□□□□ -0.59
RPS28-204ENST00000602140 NHLRC1Q6VVB1 395 aa11.35□□□□□ -0.59
RPS28-204ENST00000602140 OR6N1Q8NGY5 312 aa11.35□□□□□ -0.59
RPS28-204ENST00000602140 MRPL24Q96A35 216 aaKnown RBP11.35□□□□□ -0.59
RPS28-204ENST00000602140 C7orf26Q96N11 449 aa11.35□□□□□ -0.59
RPS28-204ENST00000602140 ZNF607Q96SK3 696 aa11.35□□□□□ -0.59
RPS28-204ENST00000602140 EBF4Q9BQW3 602 aa11.35□□□□□ -0.59
RPS28-204ENST00000602140 ULBP2Q9BZM5 246 aa11.35□□□□□ -0.59
RPS28-204ENST00000602140 IKZF5Q9H5V7 419 aa11.35□□□□□ -0.59
RPS28-204ENST00000602140 TMEM38AQ9H6F2 299 aa11.35□□□□□ -0.59
RPS28-204ENST00000602140 SLC52A3Q9NQ40 469 aa11.35□□□□□ -0.59
RPS28-204ENST00000602140 MRPL39Q9NYK5 338 aaKnown RBP11.35□□□□□ -0.59
RPS28-204ENST00000602140 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.35□□□□□ -0.59
RPS28-204ENST00000602140 SLC13A4Q9UKG4 626 aa11.35□□□□□ -0.59
RPS28-204ENST00000602140 NOX1Q9Y5S8 564 aa11.35□□□□□ -0.59
RPS28-204ENST00000602140 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.34□□□□□ -0.594e-10■■■■□ 24.6
RPS28-204ENST00000602140 TRBV5-3A0A0A0MS03 114 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 ZNF726A6NNF4 738 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 EVPLLA8MZ36 301 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 PLPP3O14495 311 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 SERPINB7O75635 380 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 SERPINI2O75830 405 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 ZNF35P13682 527 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 B4GALT1P15291 398 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 ZNF14P17017 642 aaPredicted RBP11.34□□□□□ -0.59
RPS28-204ENST00000602140 GPX2P18283 190 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 AHCYP23526 432 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 PTDSS1P48651 473 aaKnown RBP11.34□□□□□ -0.59
RPS28-204ENST00000602140 CDH12P55289 794 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 TRMT5Q32P41 509 aaKnown RBP11.34□□□□□ -0.59
RPS28-204ENST00000602140 AGKQ53H12 422 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 LIPNQ5VXI9 398 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 ZNF627Q7L945 461 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 RANBP3LQ86VV4 465 aaPredicted RBP11.34□□□□□ -0.59
RPS28-204ENST00000602140 ARMC8Q8IUR7 673 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 LINC01356Q8N9X3 169 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 SMYD1Q8NB12 490 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 BHLHE22Q8NFJ8 381 aaPredicted RBP11.34□□□□□ -0.59
RPS28-204ENST00000602140 HPS1Q92902 700 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 ZNF75AQ96N20 296 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 FOXB1Q99853 325 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 TMEM43Q9BTV4 400 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 CCDC28BQ9BUN5 200 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 MRPL37Q9BZE1 423 aaKnown RBP11.34□□□□□ -0.59
RPS28-204ENST00000602140 SLCO1B3Q9NPD5 702 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 ZNF224Q9NZL3 707 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 TMEFF2Q9UIK5 374 aaPredicted RBP11.34□□□□□ -0.59
RPS28-204ENST00000602140 CORO2BQ9UQ03 480 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 SPEF1Q9Y4P9 236 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 GMEB1Q9Y692 573 aa11.34□□□□□ -0.59
RPS28-204ENST00000602140 C11orf98E9PRG8 122 aa11.33□□□□□ -0.6
RPS28-204ENST00000602140 M0R233 179 aa11.33□□□□□ -0.6
RPS28-204ENST00000602140 SYNGR3O43761 229 aa11.33□□□□□ -0.6
RPS28-204ENST00000602140 MFN2O95140 757 aa11.33□□□□□ -0.6
RPS28-204ENST00000602140 ADORA3P0DMS8 318 aa11.33□□□□□ -0.6
RPS28-204ENST00000602140 TCN1P20061 433 aaPredicted RBP11.33□□□□□ -0.6
RPS28-204ENST00000602140 GIPRP48546 466 aa11.33□□□□□ -0.6
RPS28-204ENST00000602140 EVX1P49640 407 aa11.33□□□□□ -0.6
RPS28-204ENST00000602140 CDH15P55291 814 aa11.33□□□□□ -0.6
RPS28-204ENST00000602140 RAB1AP62820 205 aa11.33□□□□□ -0.6
RPS28-204ENST00000602140 CCNIQ14094 377 aa11.33□□□□□ -0.6
RPS28-204ENST00000602140 PXKQ7Z7A4 578 aa11.33□□□□□ -0.6
RPS28-204ENST00000602140 SNX32Q86XE0 403 aa11.33□□□□□ -0.6
RPS28-204ENST00000602140 HIPK4Q8NE63 616 aa11.33□□□□□ -0.6
RPS28-204ENST00000602140 LRRC8CQ8TDW0 803 aa11.33□□□□□ -0.6
RPS28-204ENST00000602140 SYT3Q9BQG1 590 aa11.33□□□□□ -0.6
RPS28-204ENST00000602140 MS4A5Q9H3V2 200 aa11.33□□□□□ -0.6
RPS28-204ENST00000602140 REV1Q9UBZ9 1251 aa11.33□□□□□ -0.6
RPS28-204ENST00000602140 ANGPT4Q9Y264 503 aa11.33□□□□□ -0.6
RPS28-204ENST00000602140 M0R3H8 397 aa11.32□□□□□ -0.6
RPS28-204ENST00000602140 HAX1O00165 279 aa11.32□□□□□ -0.6
RPS28-204ENST00000602140 OR6A2O95222 327 aa11.32□□□□□ -0.6
RPS28-204ENST00000602140 RAB36O95755 333 aa11.32□□□□□ -0.6
RPS28-204ENST00000602140 MT-ATP6P00846 226 aa11.32□□□□□ -0.6
RPS28-204ENST00000602140 GLRXP35754 106 aa11.32□□□□□ -0.6
RPS28-204ENST00000602140 SRP14P37108 136 aaKnown RBP11.32□□□□□ -0.6
RPS28-204ENST00000602140 ALDH3B1P43353 468 aa11.32□□□□□ -0.6
RPS28-204ENST00000602140 CSNK1A1P48729 337 aa11.32□□□□□ -0.6
RPS28-204ENST00000602140 BIDP55957 195 aa11.32□□□□□ -0.6
RPS28-204ENST00000602140 GALK2Q01415 458 aa11.32□□□□□ -0.6
RPS28-204ENST00000602140 ELFN2Q5R3F8 820 aa11.32□□□□□ -0.6
RPS28-204ENST00000602140 SWT1Q5T5J6 900 aaKnown RBP11.32□□□□□ -0.6
RPS28-204ENST00000602140 GKAP1Q5VSY0 366 aaPredicted RBP11.32□□□□□ -0.6
RPS28-204ENST00000602140 DLEU7Q6UYE1 221 aa11.32□□□□□ -0.6
RPS28-204ENST00000602140 LRP11Q86VZ4 500 aa11.32□□□□□ -0.6
RPS28-204ENST00000602140 OR5J2Q8NH18 312 aa11.32□□□□□ -0.6
RPS28-204ENST00000602140 C1orf159Q96HA4 380 aa11.32□□□□□ -0.6
RPS28-204ENST00000602140 MCHR1Q99705 422 aa11.32□□□□□ -0.6
RPS28-204ENST00000602140 CPPED1Q9BRF8 314 aaPredicted RBP11.32□□□□□ -0.6
RPS28-204ENST00000602140 EVA1AQ9H8M9 152 aa11.32□□□□□ -0.6
RPS28-204ENST00000602140 FZR1Q9UM11 496 aa11.32□□□□□ -0.6
RPS28-204ENST00000602140 ERLIN1O75477 346 aa11.31□□□□□ -0.6
RPS28-204ENST00000602140 UBL3O95164 117 aa11.31□□□□□ -0.6
RPS28-204ENST00000602140 HPXP02790 462 aa11.31□□□□□ -0.6
RPS28-204ENST00000602140 OPN1SWP03999 348 aa11.31□□□□□ -0.6
RPS28-204ENST00000602140 PATE4P0C8F1 98 aa11.31□□□□□ -0.6
RPS28-204ENST00000602140 COL8A2P25067 703 aa11.31□□□□□ -0.6
RPS28-204ENST00000602140 ATP4BP51164 291 aa11.31□□□□□ -0.6
RPS28-204ENST00000602140 SEC24CP53992 1094 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms