RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 CGREF1Q99674 301 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 FOXB1Q99853 325 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 BPESC1Q9GZL8 116 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 NOX3Q9HBY0 568 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 SPEF1Q9Y4P9 236 aa8.49□□□□□ -1.05
VRK3-216ENST00000599342 HEATR1Q9H583 2144 aaKnown RBP8.48□□□□□ -1.05
VRK3-216ENST00000599342 IGHV4-61A0A0C4DH41 118 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 LOC100289279A0A1B0GTE1 492 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 SH3PXD2BA1X283 911 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 ZNF503-AS2A6NEH8 195 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 CPSF4LA6NMK7 179 aaKnown RBP8.48□□□□□ -1.05
VRK3-216ENST00000599342 LRRN3E7EW58 273 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 C11orf98E9PRG8 122 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 M0QX08 132 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 PLPP3O14495 311 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 TPST2O60704 377 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 ENTPD5O75356 428 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 HLA-HP01893 362 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 ADORA3P0DMS8 318 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 DAOP14920 347 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 B4GALT1P15291 398 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 SRD5A1P18405 259 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 HNF1AP20823 631 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 LSP1P33241 339 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 PTDSS1P48651 473 aaKnown RBP8.48□□□□□ -1.05
VRK3-216ENST00000599342 CSNK1A1P48729 337 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 PCBP3P57721 371 aaKnown RBP8.48□□□□□ -1.05
VRK3-216ENST00000599342 GALK2Q01415 458 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 PIGFQ07326 219 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 DUSP7Q16829 419 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 TRMT5Q32P41 509 aaKnown RBP8.48□□□□□ -1.05
VRK3-216ENST00000599342 ENTPD8Q5MY95 495 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 INTS11Q5TA45 600 aaKnown RBP8.48□□□□□ -1.05
VRK3-216ENST00000599342 GKAP1Q5VSY0 366 aaPredicted RBP8.48□□□□□ -1.05
VRK3-216ENST00000599342 TTC33Q6PID6 262 aaPredicted RBP8.48□□□□□ -1.05
VRK3-216ENST00000599342 PATL1Q86TB9 770 aaKnown RBP8.48□□□□□ -1.05
VRK3-216ENST00000599342 PTOV1Q86YD1 416 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 DPP10Q8N608 796 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 VANGL1Q8TAA9 524 aaPredicted RBP8.48□□□□□ -1.05
VRK3-216ENST00000599342 ADAMTS16Q8TE57 1224 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 CKAP2Q8WWK9 683 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 RASSF5Q8WWW0 418 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 TXNDC15Q96J42 360 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 ARHGDIGQ99819 225 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 WFDC6Q9BQY6 131 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 DENND2DQ9H6A0 471 aaPredicted RBP8.48□□□□□ -1.05
VRK3-216ENST00000599342 NPHS2Q9NP85 383 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 FBXL3Q9UKT7 428 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 CMAHPQ9Y471 501 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 ABCA1O95477 2261 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 TLN2Q9Y4G6 2542 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 ZANQ9Y493 2812 aa8.48□□□□□ -1.05
VRK3-216ENST00000599342 A0A0G2JND7 137 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 TRAPPC13A5PLN9 417 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 M0R233 179 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 KPNA4O00629 521 aaPredicted RBP8.47□□□□□ -1.05
VRK3-216ENST00000599342 PHF1O43189 567 aaPredicted RBP8.47□□□□□ -1.05
VRK3-216ENST00000599342 RNF13O43567 381 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 UBL3O95164 117 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 STAMBPO95630 424 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 CH25HO95992 272 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 HIST1H2ABP04908 130 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 ADRA2AP08913 450 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 UMPSP11172 480 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 IFNGR1P15260 489 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 ZNF23P17027 643 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 CD247P20963 164 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 IGFBP5P24593 272 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 PCGF2P35227 344 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 CHN2P52757 468 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 BIDP55957 195 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 RPS23P62266 143 aaKnown RBP8.47□□□□□ -1.05
VRK3-216ENST00000599342 SELPLGQ14242 412 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 SLC35D2Q76EJ3 337 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 HIST3H2AQ7L7L0 130 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 ZNF627Q7L945 461 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 HDXQ7Z353 690 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 RETREG3Q86VR2 466 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 PHC2Q8IXK0 858 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 CDK20Q8IZL9 346 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 GPR32P1Q8NGA4 272 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 OR6T1Q8NGN1 323 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 OR10A6Q8NH74 314 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 TSPEARQ8WU66 669 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 HIST1H2ACQ93077 130 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 ZNF566Q969W8 418 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 MSI2Q96DH6 328 aaKnown RBP8.47□□□□□ -1.05
VRK3-216ENST00000599342 MS4A3Q96HJ5 214 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 DOK1Q99704 481 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 SIKE1Q9BRV8 207 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 KAT8Q9H7Z6 458 aaKnown RBP8.47□□□□□ -1.05
VRK3-216ENST00000599342 NANSQ9NR45 359 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 ARGLU1Q9NWB6 273 aaPredicted RBP8.47□□□□□ -1.05
VRK3-216ENST00000599342 B3GNT2Q9NY97 397 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 SLC7A7Q9UM01 511 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 PLCE1Q9P212 2302 aa8.47□□□□□ -1.05
VRK3-216ENST00000599342 JMJD1CQ15652 2540 aa8.46□□□□□ -1.05
VRK3-216ENST00000599342 SYNGR3O43761 229 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 FARS2O95363 451 aaKnown RBP8.46□□□□□ -1.06
VRK3-216ENST00000599342 TGFAP01135 160 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms