RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 SDR9C7Q8NEX9 313 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 TSPAN14Q8NG11 270 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 ZNF519Q8TB69 540 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 ASB10Q8WXI3 467 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 PTP4A1Q93096 173 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 INTS12Q96CB8 462 aaKnown RBP13.61□□□□□ -0.23
TRIM28-209ENST00000597423 SLC25A44Q96H78 314 aaPredicted RBP13.61□□□□□ -0.23
TRIM28-209ENST00000597423 UCN2Q96RP3 112 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 NMNAT3Q96T66 252 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 ALG12Q9BV10 488 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 PRDM14Q9GZV8 571 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 OR51V1Q9H2C8 321 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 HINT3Q9NQE9 182 aaKnown RBP13.61□□□□□ -0.23
TRIM28-209ENST00000597423 PARPBPQ9NWS1 579 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 KLHL9Q9P2J3 617 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 B3GAT1Q9P2W7 334 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 AASSQ9UDR5 926 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 PSORS1C1Q9UIG5 152 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 PCDHGB1Q9Y5G3 927 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 SNX5Q9Y5X3 404 aa13.61□□□□□ -0.23
TRIM28-209ENST00000597423 IGHV3-15A0A0B4J1V0 119 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 A0A1B0GTH9 108 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 PRSS37A4D1T9 235 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 FAM183AA6NL82 134 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 ERVH48-1M5A8F1 160 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 HLA-DOBP13765 273 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 PTGS2P35354 604 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 PTGER4P35408 488 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 MTNR1AP48039 350 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 SLC16A1P53985 500 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 RPS7P62081 194 aaKnown RBP13.6□□□□□ -0.23
TRIM28-209ENST00000597423 SMN1Q16637 294 aaKnown RBP13.6□□□□□ -0.23
TRIM28-209ENST00000597423 KLHL12Q53G59 568 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 EEF1A1P5Q5VTE0 462 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 LAIR2Q6ISS4 152 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 P4HA3Q7Z4N8 544 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 LSRQ86X29 649 aaPredicted RBP13.6□□□□□ -0.23
TRIM28-209ENST00000597423 STX19Q8N4C7 294 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 CISD2Q8N5K1 135 aaKnown RBP13.6□□□□□ -0.23
TRIM28-209ENST00000597423 CYB561A3Q8NBI2 242 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 FAR1Q8WVX9 515 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 ROBO4Q8WZ75 1007 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 ZNF845Q96IR2 970 aaPredicted RBP13.6□□□□□ -0.23
TRIM28-209ENST00000597423 COPS4Q9BT78 406 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 DUSP21Q9H596 190 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 RNF122Q9H9V4 155 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 GP6Q9HCN6 339 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 GLRX2Q9NS18 164 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 VSX1Q9NZR4 365 aaPredicted RBP13.6□□□□□ -0.23
TRIM28-209ENST00000597423 LUZP4Q9P127 313 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 KLHL13Q9P2N7 655 aa13.6□□□□□ -0.23
TRIM28-209ENST00000597423 OR6C68A6NDL8 312 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 SLC22A20A6NK97 555 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 ZNF814B7Z6K7 855 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 TRAF3IP2O43734 574 aaPredicted RBP13.59□□□□□ -0.23
TRIM28-209ENST00000597423 FADS2O95864 444 aaKnown RBP13.59□□□□□ -0.23
TRIM28-209ENST00000597423 HOXD4P09016 255 aaPredicted RBP13.59□□□□□ -0.23
TRIM28-209ENST00000597423 PIPP12273 146 aaPredicted RBP13.59□□□□□ -0.23
TRIM28-209ENST00000597423 GABRA1P14867 456 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 CLDN17P56750 224 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 CLRN1P58418 232 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 RAB40BQ12829 278 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 POU4F2Q12837 409 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 APOFQ13790 326 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 MESTQ5EB52 335 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 THEM4Q5T1C6 240 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 ABLIM2Q6H8Q1 611 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 NHLRC1Q6VVB1 395 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 GGHQ92820 318 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 WBP1Q96G27 269 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 TXNDC15Q96J42 360 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 MYCBPQ99417 103 aaPredicted RBP13.59□□□□□ -0.23
TRIM28-209ENST00000597423 DDOQ99489 341 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 TEAD3Q99594 435 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 TUBA1CQ9BQE3 449 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 CALHM2Q9HA72 323 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 SRA1Q9HD15 236 aaKnown RBP13.59□□□□□ -0.23
TRIM28-209ENST00000597423 VCX3AQ9NNX9 186 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 AMBNQ9NP70 447 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 MRPS18AQ9NVS2 196 aaKnown RBP13.59□□□□□ -0.23
TRIM28-209ENST00000597423 CHCHD3Q9NX63 227 aaKnown RBP13.59□□□□□ -0.23
TRIM28-209ENST00000597423 MED29Q9NX70 200 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 HAO2Q9NYQ3 351 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 RCE1Q9Y256 329 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 FKBP7Q9Y680 259 aa13.59□□□□□ -0.23
TRIM28-209ENST00000597423 IGKV3D-15A0A087WSY6 115 aa13.58□□□□□ -0.24
TRIM28-209ENST00000597423 SLC22A23A1A5C7 686 aa13.58□□□□□ -0.24
TRIM28-209ENST00000597423 SLC35F4A4IF30 521 aa13.58□□□□□ -0.24
TRIM28-209ENST00000597423 OR6C65A6NJZ3 312 aa13.58□□□□□ -0.24
TRIM28-209ENST00000597423 ZNF724A8MTY0 619 aa13.58□□□□□ -0.24
TRIM28-209ENST00000597423 RGS10O43665 173 aa13.58□□□□□ -0.24
TRIM28-209ENST00000597423 XPNPEP2O43895 674 aa13.58□□□□□ -0.24
TRIM28-209ENST00000597423 TRMUO75648 421 aaKnown RBP13.58□□□□□ -0.24
TRIM28-209ENST00000597423 DBTP11182 482 aaKnown RBP13.58□□□□□ -0.24
TRIM28-209ENST00000597423 GUCA1AP43080 201 aaPredicted RBP13.58□□□□□ -0.24
TRIM28-209ENST00000597423 NUDT6P53370 316 aa13.58□□□□□ -0.24
TRIM28-209ENST00000597423 TUBA4AP68366 448 aa13.58□□□□□ -0.24
TRIM28-209ENST00000597423 RBPJQ06330 500 aa13.58□□□□□ -0.24
TRIM28-209ENST00000597423 MELKQ14680 651 aa13.58□□□□□ -0.24
TRIM28-209ENST00000597423 ZNF324BQ6AW86 544 aaPredicted RBP13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms