RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 LOC390937A0A1W2PQ73 354 aa17.74■□□□□ 0.43
SHMT1-209ENST00000582653 VSTM5A8MXK1 200 aa17.74■□□□□ 0.43
SHMT1-209ENST00000582653 ZNF99A8MXY4 864 aaPredicted RBP17.74■□□□□ 0.43
SHMT1-209ENST00000582653 C11orf98E9PRG8 122 aa17.74■□□□□ 0.43
SHMT1-209ENST00000582653 CHP2O43745 196 aa17.74■□□□□ 0.43
SHMT1-209ENST00000582653 PCGF2P35227 344 aa17.74■□□□□ 0.43
SHMT1-209ENST00000582653 NR4A2P43354 598 aa17.74■□□□□ 0.43
SHMT1-209ENST00000582653 CRYBA2P53672 197 aa17.74■□□□□ 0.43
SHMT1-209ENST00000582653 NANOGP8Q6NSW7 305 aa17.74■□□□□ 0.43
SHMT1-209ENST00000582653 PATL1Q86TB9 770 aaKnown RBP17.74■□□□□ 0.43
SHMT1-209ENST00000582653 CCDC36Q8IYA8 594 aa17.74■□□□□ 0.43
SHMT1-209ENST00000582653 ANKS4BQ8N8V4 417 aa17.74■□□□□ 0.43
SHMT1-209ENST00000582653 SLC26A7Q8TE54 656 aa17.74■□□□□ 0.43
SHMT1-209ENST00000582653 ADAMTS16Q8TE57 1224 aa17.74■□□□□ 0.43
SHMT1-209ENST00000582653 VRK1Q99986 396 aaPredicted RBP17.74■□□□□ 0.43
SHMT1-209ENST00000582653 PLK3Q9H4B4 646 aa17.74■□□□□ 0.43
SHMT1-209ENST00000582653 NANOGQ9H9S0 305 aa17.74■□□□□ 0.43
SHMT1-209ENST00000582653 MYOZ1Q9NP98 299 aaPredicted RBP17.74■□□□□ 0.43
SHMT1-209ENST00000582653 SLC7A7Q9UM01 511 aa17.74■□□□□ 0.43
SHMT1-209ENST00000582653 ARFGEF3Q5TH69 2177 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 MXRA5Q9NR99 2828 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 ZNF726A6NNF4 738 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 RNF212BA8MTL3 300 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 CH25HO95992 272 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 HLA-HP01893 362 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 ADORA3P0DMS8 318 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 THBS4P35443 961 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 ARR3P36575 388 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 GZMKP49863 264 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 VMACQ2NL98 169 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 RABL3Q5HYI8 236 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 PXKQ7Z7A4 578 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 SLC30A8Q8IWU4 369 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 LRRC17Q8N6Y2 441 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 NUP37Q8NFH4 326 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 IL17RDQ8NFM7 739 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 OR6N1Q8NGY5 312 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 OR5J2Q8NH18 312 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 TMEM158Q8WZ71 300 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 LRR1Q96L50 414 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 FOXN4Q96NZ1 517 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 PIMREGQ9BSJ6 248 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 NOX3Q9HBY0 568 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 LPAR3Q9UBY5 353 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 USP22Q9UPT9 525 aa17.73■□□□□ 0.43
SHMT1-209ENST00000582653 KPNA4O00629 521 aaPredicted RBP17.72■□□□□ 0.43
SHMT1-209ENST00000582653 LMX1BO60663 402 aa17.72■□□□□ 0.43
SHMT1-209ENST00000582653 MT-ATP6P00846 226 aa17.72■□□□□ 0.43
SHMT1-209ENST00000582653 IFNGR1P15260 489 aa17.72■□□□□ 0.43
SHMT1-209ENST00000582653 BIDP55957 195 aa17.72■□□□□ 0.43
SHMT1-209ENST00000582653 PIGFQ07326 219 aa17.72■□□□□ 0.43
SHMT1-209ENST00000582653 CYLC2Q14093 348 aaPredicted RBP17.72■□□□□ 0.43
SHMT1-209ENST00000582653 TRMT5Q32P41 509 aaKnown RBP17.72■□□□□ 0.43
SHMT1-209ENST00000582653 TTC33Q6PID6 262 aaPredicted RBP17.72■□□□□ 0.43
SHMT1-209ENST00000582653 SLC46A3Q7Z3Q1 461 aa17.72■□□□□ 0.43
SHMT1-209ENST00000582653 ZNF540Q8NDQ6 660 aa17.72■□□□□ 0.43
SHMT1-209ENST00000582653 DOK1Q99704 481 aa17.72■□□□□ 0.43
SHMT1-209ENST00000582653 RAB1BQ9H0U4 201 aa17.72■□□□□ 0.43
SHMT1-209ENST00000582653 ZNF442Q9H7R0 627 aa17.72■□□□□ 0.43
SHMT1-209ENST00000582653 B3GNT2Q9NY97 397 aa17.72■□□□□ 0.43
SHMT1-209ENST00000582653 TAS2R5Q9NYW4 299 aa17.72■□□□□ 0.43
SHMT1-209ENST00000582653 POFUT2Q9Y2G5 429 aa17.72■□□□□ 0.43
SHMT1-209ENST00000582653 IGHV2OR16-5A0A0B4J2B6 119 aa17.71■□□□□ 0.43
SHMT1-209ENST00000582653 TRAPPC13A5PLN9 417 aa17.71■□□□□ 0.43
SHMT1-209ENST00000582653 OR6A2O95222 327 aa17.71■□□□□ 0.43
SHMT1-209ENST00000582653 CD79AP11912 226 aa17.71■□□□□ 0.43
SHMT1-209ENST00000582653 TNFRSF1BP20333 461 aa17.71■□□□□ 0.43
SHMT1-209ENST00000582653 PPOXP50336 477 aa17.71■□□□□ 0.43
SHMT1-209ENST00000582653 ZNF74Q16587 644 aa17.71■□□□□ 0.43
SHMT1-209ENST00000582653 INTS11Q5TA45 600 aaKnown RBP17.71■□□□□ 0.43
SHMT1-209ENST00000582653 CGB2Q6NT52 195 aa17.71■□□□□ 0.43
SHMT1-209ENST00000582653 ZNF813Q6ZN06 617 aa17.71■□□□□ 0.43
SHMT1-209ENST00000582653 CCDC80Q76M96 950 aa17.71■□□□□ 0.43
SHMT1-209ENST00000582653 LRRC58Q96CX6 371 aa17.71■□□□□ 0.43
SHMT1-209ENST00000582653 MS4A3Q96HJ5 214 aa17.71■□□□□ 0.43
SHMT1-209ENST00000582653 ULBP2Q9BZM5 246 aa17.71■□□□□ 0.43
SHMT1-209ENST00000582653 SHARPINQ9H0F6 387 aa17.71■□□□□ 0.43
SHMT1-209ENST00000582653 B3GAT2Q9NPZ5 323 aa17.71■□□□□ 0.43
SHMT1-209ENST00000582653 FGFR1OP2Q9NVK5 253 aa17.71■□□□□ 0.43
SHMT1-209ENST00000582653 FXYD1O00168 92 aa17.7■□□□□ 0.42
SHMT1-209ENST00000582653 B4GALT1P15291 398 aa17.7■□□□□ 0.42
SHMT1-209ENST00000582653 THBS2P35442 1172 aa17.7■□□□□ 0.42
SHMT1-209ENST00000582653 KLF10Q13118 480 aa17.7■□□□□ 0.42
SHMT1-209ENST00000582653 GGTLC2Q14390 218 aa17.7■□□□□ 0.42
SHMT1-209ENST00000582653 CARTPTQ16568 116 aa17.7■□□□□ 0.42
SHMT1-209ENST00000582653 CALHM3Q86XJ0 350 aa17.7■□□□□ 0.42
SHMT1-209ENST00000582653 PHC2Q8IXK0 858 aa17.7■□□□□ 0.42
SHMT1-209ENST00000582653 ZCCHC24Q8N2G6 241 aaKnown RBP17.7■□□□□ 0.42
SHMT1-209ENST00000582653 ECSITQ9BQ95 431 aa17.7■□□□□ 0.42
SHMT1-209ENST00000582653 PRSS27Q9BQR3 290 aa17.7■□□□□ 0.42
SHMT1-209ENST00000582653 NANSQ9NR45 359 aa17.7■□□□□ 0.42
SHMT1-209ENST00000582653 SH3GLB1Q9Y371 365 aa17.7■□□□□ 0.42
SHMT1-209ENST00000582653 LOC100653049A0A140TA62 436 aa17.69■□□□□ 0.42
SHMT1-209ENST00000582653 TMEM129A0AVI4 362 aa17.69■□□□□ 0.42
SHMT1-209ENST00000582653 SHOX2O60902 331 aaPredicted RBP17.69■□□□□ 0.42
SHMT1-209ENST00000582653 KRT34O76011 436 aa17.69■□□□□ 0.42
SHMT1-209ENST00000582653 TROVE2P10155 538 aaKnown RBP eCLIP17.69■□□□□ 0.42
SHMT1-209ENST00000582653 NPR2P20594 1047 aa17.69■□□□□ 0.42
SHMT1-209ENST00000582653 CSNK1A1P48729 337 aa17.69■□□□□ 0.42
SHMT1-209ENST00000582653 ARFIP2P53365 341 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms