RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 LMF1Q96S06 567 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 SPSB2Q99619 263 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 CHST6Q9GZX3 395 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 ACAD8Q9UKU7 415 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 ZNF780BQ9Y6R6 833 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 SNRNP200O75643 2136 aaKnown RBP8.78□□□□□ -1
CCDC40-212ENST00000574799 TRAV1-2A0A0B4J238 106 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 ZNF208O43345 1280 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 ICOSLGO75144 302 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 SLCO2B1O94956 709 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 CD3DP04234 171 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 CSNK2A2P19784 350 aaPredicted RBP8.78□□□□□ -1
CCDC40-212ENST00000574799 NT5EP21589 574 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 CD80P33681 288 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 TRHRP34981 398 aaPredicted RBP8.78□□□□□ -1
CCDC40-212ENST00000574799 DHODHQ02127 395 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 PLEKHN1Q494U1 663 aaPredicted RBP8.78□□□□□ -1
CCDC40-212ENST00000574799 OR10K2Q6IF99 312 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 FIP1L1Q6UN15 594 aaKnown RBP8.78□□□□□ -1
CCDC40-212ENST00000574799 TMEM205Q6UW68 189 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 ACOT7LQ6ZUV0 252 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 USP53Q70EK8 1073 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 OVCH1Q7RTY7 1134 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 SKA3Q8IX90 412 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 NUP43Q8NFH3 380 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 GAL3ST3Q96A11 431 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 MACROD1Q9BQ69 325 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 SULT4A1Q9BR01 284 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 EXOSC3Q9NQT5 275 aaKnown RBP8.78□□□□□ -1
CCDC40-212ENST00000574799 C2orf42Q9NWW7 574 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 SLC35A3Q9Y2D2 325 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 NDUFS4O43181 175 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 ERI3O43414 337 aaKnown RBP8.78□□□□□ -1
CCDC40-212ENST00000574799 IFNA6P05013 189 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 POU2F2P09086 479 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 CD53P19397 219 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 MPGP29372 298 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 PBX2P40425 430 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 C21orf62-AS1Q17RA5 79 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 FAM78AQ5JUQ0 283 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 NCMAPQ5T1S8 102 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 STEAP1BQ6NZ63 245 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 C3orf33Q6P1S2 294 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 ASPGQ86U10 573 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 SMIM19Q96E16 107 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 ZNF559Q9BR84 538 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 IL21RQ9HBE5 538 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 ZDHHC4Q9NPG8 344 aa8.78□□□□□ -1
CCDC40-212ENST00000574799 ATXN7L1Q9ULK2 861 aaPredicted RBP8.78□□□□□ -1
CCDC40-212ENST00000574799 MYO9BQ13459 2157 aa8.77□□□□□ -1
CCDC40-212ENST00000574799 OR6C76A6NM76 312 aa8.77□□□□□ -1
CCDC40-212ENST00000574799 IMPA2O14732 288 aa8.77□□□□□ -1
CCDC40-212ENST00000574799 CTDSPLO15194 276 aa8.77□□□□□ -1
CCDC40-212ENST00000574799 C1orf105O95561 183 aa8.77□□□□□ -1
CCDC40-212ENST00000574799 AKR1C4P17516 323 aa8.77□□□□□ -1
CCDC40-212ENST00000574799 MST1P26927 711 aa8.77□□□□□ -1
CCDC40-212ENST00000574799 CALCRP30988 508 aa8.77□□□□□ -1
CCDC40-212ENST00000574799 MC3RP41968 323 aa8.77□□□□□ -1
CCDC40-212ENST00000574799 LBX1P52954 281 aa8.77□□□□□ -1
CCDC40-212ENST00000574799 TDGQ13569 410 aa8.77□□□□□ -1
CCDC40-212ENST00000574799 CDK5R1Q15078 307 aa8.77□□□□□ -1
CCDC40-212ENST00000574799 OR2B11Q5JQS5 317 aa8.77□□□□□ -1
CCDC40-212ENST00000574799 OR52W1Q6IF63 320 aa8.77□□□□□ -1
CCDC40-212ENST00000574799 RHOUQ7L0Q8 258 aa8.77□□□□□ -1
CCDC40-212ENST00000574799 ZNF561Q8N587 486 aa8.77□□□□□ -1
CCDC40-212ENST00000574799 CHST4Q8NCG5 386 aa8.77□□□□□ -1
CCDC40-212ENST00000574799 OR56A1Q8NGH5 318 aa8.77□□□□□ -1
CCDC40-212ENST00000574799 PFN4Q8NHR9 129 aa8.77□□□□□ -1
CCDC40-212ENST00000574799 NUBPLQ8TB37 319 aa8.77□□□□□ -1
CCDC40-212ENST00000574799 APOBEC4Q8WW27 367 aaKnown RBP8.77□□□□□ -1
CCDC40-212ENST00000574799 ISOC2Q96AB3 205 aa8.77□□□□□ -1
CCDC40-212ENST00000574799 MAP3K3Q99759 626 aa8.77□□□□□ -1
CCDC40-212ENST00000574799 ZMAT3Q9HA38 289 aaKnown RBP8.77□□□□□ -1
CCDC40-212ENST00000574799 TMEM27Q9HBJ8 222 aa8.77□□□□□ -1
CCDC40-212ENST00000574799 KCNAB3O43448 404 aa8.77□□□□□ -1.01
CCDC40-212ENST00000574799 OR4E1P0C645 316 aa8.77□□□□□ -1.01
CCDC40-212ENST00000574799 FXYD6P3P58550 94 aa8.77□□□□□ -1.01
CCDC40-212ENST00000574799 DECR1Q16698 335 aa8.77□□□□□ -1.01
CCDC40-212ENST00000574799 AMZ1Q400G9 498 aa8.77□□□□□ -1.01
CCDC40-212ENST00000574799 RPL22L1Q6P5R6 122 aaKnown RBP8.77□□□□□ -1.01
CCDC40-212ENST00000574799 MAMSTRQ6ZN01 415 aa8.77□□□□□ -1.01
CCDC40-212ENST00000574799 MOB3CQ70IA8 216 aa8.77□□□□□ -1.01
CCDC40-212ENST00000574799 MTSS1LQ765P7 747 aa8.77□□□□□ -1.01
CCDC40-212ENST00000574799 CD163Q86VB7 1156 aa8.77□□□□□ -1.01
CCDC40-212ENST00000574799 SLC35F2Q8IXU6 374 aa8.77□□□□□ -1.01
CCDC40-212ENST00000574799 KLHDC8AQ8IYD2 350 aa8.77□□□□□ -1.01
CCDC40-212ENST00000574799 BMPERQ8N8U9 685 aa8.77□□□□□ -1.01
CCDC40-212ENST00000574799 TMEM239Q8WW34 195 aa8.77□□□□□ -1.01
CCDC40-212ENST00000574799 ARRDC3Q96B67 414 aa8.77□□□□□ -1.01
CCDC40-212ENST00000574799 LCORQ96JN0 433 aaPredicted RBP8.77□□□□□ -1.01
CCDC40-212ENST00000574799 PLA2G2FQ9BZM2 168 aa8.77□□□□□ -1.01
CCDC40-212ENST00000574799 CCDC86Q9H6F5 360 aaKnown RBP8.77□□□□□ -1.01
CCDC40-212ENST00000574799 ADAP2Q9NPF8 381 aa8.77□□□□□ -1.01
CCDC40-212ENST00000574799 UQCC1Q9NVA1 299 aa8.77□□□□□ -1.01
CCDC40-212ENST00000574799 GFOD1Q9NXC2 390 aa8.77□□□□□ -1.01
CCDC40-212ENST00000574799 FOXJ3Q9UPW0 622 aa8.77□□□□□ -1.01
CCDC40-212ENST00000574799 MOKQ9UQ07 419 aa8.77□□□□□ -1.01
CCDC40-212ENST00000574799 KCNE3Q9Y6H6 103 aa8.77□□□□□ -1.01
CCDC40-212ENST00000574799 FREM2Q5SZK8 3169 aa8.77□□□□□ -1.01
CCDC40-212ENST00000574799 SLC5A10A0PJK1 596 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms