RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 FMO6PO60774 539 aa13.89□□□□□ -0.19
CLN3-229ENST00000567963 STAMBPO95630 424 aa13.89□□□□□ -0.19
CLN3-229ENST00000567963 HLA-HP01893 362 aa13.89□□□□□ -0.19
CLN3-229ENST00000567963 ERCC1P07992 297 aaPredicted RBP13.89□□□□□ -0.19
CLN3-229ENST00000567963 CD79AP11912 226 aa13.89□□□□□ -0.19
CLN3-229ENST00000567963 DAOP14920 347 aa13.89□□□□□ -0.19
CLN3-229ENST00000567963 ZNF23P17027 643 aa13.89□□□□□ -0.19
CLN3-229ENST00000567963 NR4A1P22736 598 aa13.89□□□□□ -0.19
CLN3-229ENST00000567963 AHCYP23526 432 aa13.89□□□□□ -0.19
CLN3-229ENST00000567963 GIFP27352 417 aa13.89□□□□□ -0.19
CLN3-229ENST00000567963 THBS2P35442 1172 aa13.89□□□□□ -0.19
CLN3-229ENST00000567963 CAMK2DQ13557 499 aa13.89□□□□□ -0.19
CLN3-229ENST00000567963 GSG1Q2KHT4 349 aa13.89□□□□□ -0.19
CLN3-229ENST00000567963 TTMPQ5BVD1 217 aa13.89□□□□□ -0.19
CLN3-229ENST00000567963 KRT80Q6KB66 452 aa13.89□□□□□ -0.19
CLN3-229ENST00000567963 ZNF613Q6PF04 617 aa13.89□□□□□ -0.19
CLN3-229ENST00000567963 C10orf53Q8N6V4 93 aa13.89□□□□□ -0.19
CLN3-229ENST00000567963 C11orf65Q8NCR3 313 aa13.89□□□□□ -0.19
CLN3-229ENST00000567963 DYDC1Q8WWB3 177 aa13.89□□□□□ -0.19
CLN3-229ENST00000567963 MCHR1Q99705 422 aa13.89□□□□□ -0.19
CLN3-229ENST00000567963 LEF1Q9UJU2 399 aaPredicted RBP13.89□□□□□ -0.19
CLN3-229ENST00000567963 POFUT2Q9Y2G5 429 aa13.89□□□□□ -0.19
CLN3-229ENST00000567963 M0QX08 132 aa13.88□□□□□ -0.19
CLN3-229ENST00000567963 M0R3H8 397 aa13.88□□□□□ -0.19
CLN3-229ENST00000567963 MT-ATP6P00846 226 aa13.88□□□□□ -0.19
CLN3-229ENST00000567963 C8BP07358 591 aa13.88□□□□□ -0.19
CLN3-229ENST00000567963 IGFBP1P08833 259 aaPredicted RBP13.88□□□□□ -0.19
CLN3-229ENST00000567963 ZNF14P17017 642 aaPredicted RBP13.88□□□□□ -0.19
CLN3-229ENST00000567963 PIGFQ07326 219 aa13.88□□□□□ -0.19
CLN3-229ENST00000567963 RBBP4Q09028 425 aa13.88□□□□□ -0.19
CLN3-229ENST00000567963 SNTB2Q13425 540 aaKnown RBP13.88□□□□□ -0.19
CLN3-229ENST00000567963 FAM120AOSQ5T036 256 aa13.88□□□□□ -0.19
CLN3-229ENST00000567963 ZNF813Q6ZN06 617 aa13.88□□□□□ -0.19
CLN3-229ENST00000567963 SNX32Q86XE0 403 aa13.88□□□□□ -0.19
CLN3-229ENST00000567963 DPP10Q8N608 796 aa13.88□□□□□ -0.19
CLN3-229ENST00000567963 OR6N1Q8NGY5 312 aa13.88□□□□□ -0.19
CLN3-229ENST00000567963 OR5J2Q8NH18 312 aa13.88□□□□□ -0.19
CLN3-229ENST00000567963 CKAP2Q8WWK9 683 aa13.88□□□□□ -0.19
CLN3-229ENST00000567963 MS4A3Q96HJ5 214 aa13.88□□□□□ -0.19
CLN3-229ENST00000567963 ARHGDIGQ99819 225 aa13.88□□□□□ -0.19
CLN3-229ENST00000567963 SOX7Q9BT81 388 aa13.88□□□□□ -0.19
CLN3-229ENST00000567963 ULBP2Q9BZM5 246 aa13.88□□□□□ -0.19
CLN3-229ENST00000567963 CHODLQ9H9P2 273 aa13.88□□□□□ -0.19
CLN3-229ENST00000567963 ZNF224Q9NZL3 707 aa13.88□□□□□ -0.19
CLN3-229ENST00000567963 NDUFAF1Q9Y375 327 aa13.88□□□□□ -0.19
CLN3-229ENST00000567963 CHP2O43745 196 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 SERPINI2O75830 405 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 TGFAP01135 160 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 OPN1SWP03999 348 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 ADORA3P0DMS8 318 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 ZNF35P13682 527 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 B4GALT1P15291 398 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 SRD5A1P18405 259 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 SELPLGQ14242 412 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 NPTX1Q15818 432 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 ENTPD8Q5MY95 495 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 DHDDSQ86SQ9 333 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 CDK20Q8IZL9 346 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 ZNF786Q8N393 782 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 GPR32P1Q8NGA4 272 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 OR6T1Q8NGN1 323 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 STON2Q8WXE9 905 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 CGREF1Q99674 301 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 FOXB1Q99853 325 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 DENND2DQ9H6A0 471 aaPredicted RBP13.87□□□□□ -0.19
CLN3-229ENST00000567963 CMAHPQ9Y471 501 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.87□□□□□ -0.197e-9■■□□□ 13.5
CLN3-229ENST00000567963 LRP5LA4QPB2 252 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 C11orf98E9PRG8 122 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 THY1P04216 161 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 ADRA2AP08913 450 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 TACSTD2P09758 323 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 H2AFXP16104 143 aaPredicted RBP13.87□□□□□ -0.19
CLN3-229ENST00000567963 PTDSS1P48651 473 aaKnown RBP13.87□□□□□ -0.19
CLN3-229ENST00000567963 EVX1P49640 407 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 BIDP55957 195 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 MTPNP58546 118 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 RAB1AP62820 205 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 CYP51A1Q16850 503 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 WDR88Q6ZMY6 472 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 IL17RELQ6ZVW7 336 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 RETREG3Q86VR2 466 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 MRPL24Q96A35 216 aaKnown RBP13.87□□□□□ -0.19
CLN3-229ENST00000567963 THOC1Q96FV9 657 aaKnown RBP13.87□□□□□ -0.19
CLN3-229ENST00000567963 ZNF385DQ9H6B1 395 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 KAT8Q9H7Z6 458 aaKnown RBP13.87□□□□□ -0.19
CLN3-229ENST00000567963 DYNLRB1Q9NP97 96 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 INTS9Q9NV88 658 aaKnown RBP13.87□□□□□ -0.19
CLN3-229ENST00000567963 TAS2R5Q9NYW4 299 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 SPEF1Q9Y4P9 236 aa13.87□□□□□ -0.19
CLN3-229ENST00000567963 CPSF4LA6NMK7 179 aaKnown RBP13.86□□□□□ -0.19
CLN3-229ENST00000567963 ANGPT2O15123 496 aa13.86□□□□□ -0.19
CLN3-229ENST00000567963 LILRA1O75019 489 aa13.86□□□□□ -0.19
CLN3-229ENST00000567963 OR6A2O95222 327 aa13.86□□□□□ -0.19
CLN3-229ENST00000567963 IFNGR1P15260 489 aa13.86□□□□□ -0.19
CLN3-229ENST00000567963 GIPRP48546 466 aa13.86□□□□□ -0.19
CLN3-229ENST00000567963 CSNK1A1P48729 337 aa13.86□□□□□ -0.19
CLN3-229ENST00000567963 ZP4Q12836 540 aa13.86□□□□□ -0.19
CLN3-229ENST00000567963 RIN1Q13671 783 aa13.86□□□□□ -0.19
CLN3-229ENST00000567963 ZNF74Q16587 644 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms