RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 BIDP55957 195 aa18.02■□□□□ 0.48
CLN3-219ENST00000565778 ZP4Q12836 540 aa18.02■□□□□ 0.48
CLN3-219ENST00000565778 NPRL3Q12980 569 aa18.02■□□□□ 0.48
CLN3-219ENST00000565778 SWI5Q1ZZU3 235 aa18.02■□□□□ 0.48
CLN3-219ENST00000565778 OR4F15Q8NGB8 312 aa18.02■□□□□ 0.48
CLN3-219ENST00000565778 SLC19A3Q9BZV2 496 aa18.02■□□□□ 0.48
CLN3-219ENST00000565778 CCDC134Q9H6E4 229 aa18.02■□□□□ 0.48
CLN3-219ENST00000565778 SEC61A2Q9H9S3 476 aa18.02■□□□□ 0.48
CLN3-219ENST00000565778 ARMCX1Q9P291 453 aa18.02■□□□□ 0.48
CLN3-219ENST00000565778 IGHV4-30-2A0A087WSY4 118 aa18.01■□□□□ 0.47
CLN3-219ENST00000565778 SHOX2O60902 331 aaPredicted RBP18.01■□□□□ 0.47
CLN3-219ENST00000565778 CELA3BP08861 270 aa18.01■□□□□ 0.47
CLN3-219ENST00000565778 CSNK1A1P48729 337 aa18.01■□□□□ 0.47
CLN3-219ENST00000565778 EFNA4P52798 201 aa18.01■□□□□ 0.47
CLN3-219ENST00000565778 TAS2R41P59536 307 aa18.01■□□□□ 0.47
CLN3-219ENST00000565778 ZNF813Q6ZN06 617 aa18.01■□□□□ 0.47
CLN3-219ENST00000565778 DEF8Q6ZN54 512 aa18.01■□□□□ 0.47
CLN3-219ENST00000565778 SLC35D2Q76EJ3 337 aa18.01■□□□□ 0.47
CLN3-219ENST00000565778 MDP1Q86V88 176 aa18.01■□□□□ 0.47
CLN3-219ENST00000565778 WDFY1Q8IWB7 410 aa18.01■□□□□ 0.47
CLN3-219ENST00000565778 OR10H5Q8NGA6 315 aa18.01■□□□□ 0.47
CLN3-219ENST00000565778 PRSS27Q9BQR3 290 aa18.01■□□□□ 0.47
CLN3-219ENST00000565778 RIMS3Q9UJD0 308 aa18.01■□□□□ 0.47
CLN3-219ENST00000565778 ZNF229Q9UJW7 825 aa18.01■□□□□ 0.47
CLN3-219ENST00000565778 ZNF503-AS2A6NEH8 195 aa18■□□□□ 0.47
CLN3-219ENST00000565778 BLOC1S5-TXNDC5H3BN57 136 aa18■□□□□ 0.47
CLN3-219ENST00000565778 F12P00748 615 aaPredicted RBP18■□□□□ 0.47
CLN3-219ENST00000565778 HLA-HP01893 362 aa18■□□□□ 0.47
CLN3-219ENST00000565778 OR4A8P0C604 315 aa18■□□□□ 0.47
CLN3-219ENST00000565778 KDELR2P33947 212 aa18■□□□□ 0.47
CLN3-219ENST00000565778 MDH1P40925 334 aaKnown RBP18■□□□□ 0.47
CLN3-219ENST00000565778 OR1E2P47887 323 aa18■□□□□ 0.47
CLN3-219ENST00000565778 SNRPD2P62316 118 aaKnown RBP18■□□□□ 0.47
CLN3-219ENST00000565778 PIGFQ07326 219 aa18■□□□□ 0.47
CLN3-219ENST00000565778 ZNF525Q8N782 197 aa18■□□□□ 0.47
CLN3-219ENST00000565778 POU5F2Q8N7G0 328 aa18■□□□□ 0.47
CLN3-219ENST00000565778 IL17RDQ8NFM7 739 aa18■□□□□ 0.47
CLN3-219ENST00000565778 OR2T12Q8NG77 320 aa18■□□□□ 0.47
CLN3-219ENST00000565778 OR6X1Q8NH79 312 aa18■□□□□ 0.47
CLN3-219ENST00000565778 RP9Q8TA86 221 aaKnown RBP18■□□□□ 0.47
CLN3-219ENST00000565778 FAM168AQ92567 244 aa18■□□□□ 0.47
CLN3-219ENST00000565778 RCN3Q96D15 328 aa18■□□□□ 0.47
CLN3-219ENST00000565778 TPD52L3Q96J77 140 aa18■□□□□ 0.47
CLN3-219ENST00000565778 VRK1Q99986 396 aaPredicted RBP18■□□□□ 0.47
CLN3-219ENST00000565778 MED4Q9NPJ6 270 aa18■□□□□ 0.47
CLN3-219ENST00000565778 ALPK2Q86TB3 2170 aa18■□□□□ 0.47
CLN3-219ENST00000565778 B9A039 149 aa17.99■□□□□ 0.47
CLN3-219ENST00000565778 SLC22A2O15244 555 aa17.99■□□□□ 0.47
CLN3-219ENST00000565778 HGFACQ04756 655 aa17.99■□□□□ 0.47
CLN3-219ENST00000565778 KRTAP1-1Q07627 177 aa17.99■□□□□ 0.47
CLN3-219ENST00000565778 PIN1Q13526 163 aaPredicted RBP17.99■□□□□ 0.47
CLN3-219ENST00000565778 ADIPOQQ15848 244 aa17.99■□□□□ 0.47
CLN3-219ENST00000565778 GSG1Q2KHT4 349 aa17.99■□□□□ 0.47
CLN3-219ENST00000565778 LRRC23Q53EV4 343 aaPredicted RBP17.99■□□□□ 0.47
CLN3-219ENST00000565778 SLC46A3Q7Z3Q1 461 aa17.99■□□□□ 0.47
CLN3-219ENST00000565778 MYPOPQ86VE0 399 aaPredicted RBP17.99■□□□□ 0.47
CLN3-219ENST00000565778 NKAIN4Q8IVV8 208 aa17.99■□□□□ 0.47
CLN3-219ENST00000565778 FOXB1Q99853 325 aa17.99■□□□□ 0.47
CLN3-219ENST00000565778 ZNF426Q9BUY5 554 aa17.99■□□□□ 0.47
CLN3-219ENST00000565778 MEPEQ9NQ76 525 aaPredicted RBP17.99■□□□□ 0.47
CLN3-219ENST00000565778 B3GNT2Q9NY97 397 aa17.99■□□□□ 0.47
CLN3-219ENST00000565778 GLTPQ9NZD2 209 aa17.99■□□□□ 0.47
CLN3-219ENST00000565778 NAV3Q8IVL0 2385 aa17.98■□□□□ 0.47
CLN3-219ENST00000565778 CSPG4Q6UVK1 2322 aa17.98■□□□□ 0.47
CLN3-219ENST00000565778 ELOVL7A1L3X0 281 aa17.98■□□□□ 0.47
CLN3-219ENST00000565778 FAM220BPB1ANY3 271 aa17.98■□□□□ 0.47
CLN3-219ENST00000565778 CCDC22O60826 627 aa17.98■□□□□ 0.47
CLN3-219ENST00000565778 LY6HO94772 140 aa17.98■□□□□ 0.47
CLN3-219ENST00000565778 BCL10O95999 233 aa17.98■□□□□ 0.47
CLN3-219ENST00000565778 MT-ND1P03886 318 aa17.98■□□□□ 0.47
CLN3-219ENST00000565778 ASAH2BP0C7U1 165 aa17.98■□□□□ 0.47
CLN3-219ENST00000565778 B4GALT1P15291 398 aa17.98■□□□□ 0.47
CLN3-219ENST00000565778 FUT1P19526 365 aa17.98■□□□□ 0.47
CLN3-219ENST00000565778 THBS4P35443 961 aa17.98■□□□□ 0.47
CLN3-219ENST00000565778 MELKQ14680 651 aa17.98■□□□□ 0.47
CLN3-219ENST00000565778 CYBRD1Q53TN4 286 aa17.98■□□□□ 0.47
CLN3-219ENST00000565778 NANOGNBQ7Z5D8 188 aa17.98■□□□□ 0.47
CLN3-219ENST00000565778 MICU2Q8IYU8 434 aa17.98■□□□□ 0.47
CLN3-219ENST00000565778 NUP37Q8NFH4 326 aa17.98■□□□□ 0.47
CLN3-219ENST00000565778 TMEM54Q969K7 222 aa17.98■□□□□ 0.47
CLN3-219ENST00000565778 ZNF566Q969W8 418 aa17.98■□□□□ 0.47
CLN3-219ENST00000565778 SLC25A44Q96H78 314 aaPredicted RBP17.98■□□□□ 0.47
CLN3-219ENST00000565778 POLR2J2Q9GZM3 115 aaKnown RBP17.98■□□□□ 0.47
CLN3-219ENST00000565778 POLR2J3Q9H1A7 115 aaKnown RBP17.98■□□□□ 0.47
CLN3-219ENST00000565778 PLCE1Q9P212 2302 aa17.98■□□□□ 0.47
CLN3-219ENST00000565778 ZANQ9Y493 2812 aa17.97■□□□□ 0.47
CLN3-219ENST00000565778 IGHV2OR16-5A0A0B4J2B6 119 aa17.97■□□□□ 0.47
CLN3-219ENST00000565778 PDE5AO76074 875 aa17.97■□□□□ 0.47
CLN3-219ENST00000565778 OR5F1O95221 314 aa17.97■□□□□ 0.47
CLN3-219ENST00000565778 COX4I1P13073 169 aa17.97■□□□□ 0.47
CLN3-219ENST00000565778 RBM34P42696 430 aaKnown RBP17.97■□□□□ 0.47
CLN3-219ENST00000565778 RAB1AP62820 205 aa17.97■□□□□ 0.47
CLN3-219ENST00000565778 SELENOWP63302 87 aa17.97■□□□□ 0.47
CLN3-219ENST00000565778 ZNF627Q7L945 461 aa17.97■□□□□ 0.47
CLN3-219ENST00000565778 PIWIL3Q7Z3Z3 882 aaKnown RBP17.97■□□□□ 0.47
CLN3-219ENST00000565778 PFN4Q8NHR9 129 aa17.97■□□□□ 0.47
CLN3-219ENST00000565778 TMEM255BQ8WV15 326 aa17.97■□□□□ 0.47
CLN3-219ENST00000565778 TMEM239Q8WW34 195 aa17.97■□□□□ 0.47
CLN3-219ENST00000565778 NANOS1Q8WY41 292 aaKnown RBP17.97■□□□□ 0.47
CLN3-219ENST00000565778 SGTBQ96EQ0 304 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms