RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 IQCCQ4KMZ1 466 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 SWT1Q5T5J6 900 aaKnown RBP8.85□□□□□ -0.99
LDLR-214ENST00000560628 KRT80Q6KB66 452 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 TTC33Q6PID6 262 aaPredicted RBP8.85□□□□□ -0.99
LDLR-214ENST00000560628 LINC00114Q6XXX2 140 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 CXXC5Q7LFL8 322 aaKnown RBP8.85□□□□□ -0.99
LDLR-214ENST00000560628 PXKQ7Z7A4 578 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 TSPYL5Q86VY4 417 aaPredicted RBP8.85□□□□□ -0.99
LDLR-214ENST00000560628 CCDC36Q8IYA8 594 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 SVOPLQ8N434 492 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 LRRC17Q8N6Y2 441 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 ARIH2OSQ8N7S6 290 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 NUP37Q8NFH4 326 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 OR5J2Q8NH18 312 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 SLC26A7Q8TE54 656 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 TSPEARQ8WU66 669 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 TAMM41Q96BW9 452 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 LRR1Q96L50 414 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 DOK1Q99704 481 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 ULBP2Q9BZM5 246 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 PLK3Q9H4B4 646 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 EVA1AQ9H8M9 152 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 NOX3Q9HBY0 568 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 MOV10Q9HCE1 1003 aaKnown RBP8.85□□□□□ -0.99
LDLR-214ENST00000560628 B3GNT2Q9NY97 397 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 SLC7A7Q9UM01 511 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 USP22Q9UPT9 525 aa8.85□□□□□ -0.99
LDLR-214ENST00000560628 IGHV4-61A0A0C4DH41 118 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 LOC390937A0A1W2PQ73 354 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 VWC2LB2RUY7 222 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 CHP2O43745 196 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 FMO6PO60774 539 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 PDE5AO76074 875 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 MT-ATP6P00846 226 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 IFNA2P01563 188 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 HIST1H2ABP04908 130 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 ZNF16P17020 682 aaPredicted RBP8.84□□□□□ -0.99
LDLR-214ENST00000560628 TNFRSF1BP20333 461 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 PCGF2P35227 344 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 PTDSS1P48651 473 aaKnown RBP8.84□□□□□ -0.99
LDLR-214ENST00000560628 CSNK1A1P48729 337 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 GZMMP51124 257 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 SNTB2Q13425 540 aaKnown RBP8.84□□□□□ -0.99
LDLR-214ENST00000560628 DAG1Q14118 895 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 ZNF74Q16587 644 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 GSG1Q2KHT4 349 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 RABL3Q5HYI8 236 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 NANOGP8Q6NSW7 305 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 PODNL1Q6PEZ8 512 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 SLC35D2Q76EJ3 337 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 HIST3H2AQ7L7L0 130 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 PATL1Q86TB9 770 aaKnown RBP8.84□□□□□ -0.99
LDLR-214ENST00000560628 IL17RDQ8NFM7 739 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 FGFBP3Q8TAT2 258 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 ADAMTS16Q8TE57 1224 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 STON2Q8WXE9 905 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 HIST1H2ACQ93077 130 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 PIMREGQ9BSJ6 248 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 TMEM120AQ9BXJ8 343 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 BEX2Q9BXY8 128 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 RAB1BQ9H0U4 201 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 ZNF442Q9H7R0 627 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 VIPAS39Q9H9C1 493 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 NANOGQ9H9S0 305 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 TAS2R5Q9NYW4 299 aa8.84□□□□□ -0.99
LDLR-214ENST00000560628 LOC100289279A0A1B0GTE1 492 aa8.83□□□□□ -1
LDLR-214ENST00000560628 TRAPPC13A5PLN9 417 aa8.83□□□□□ -1
LDLR-214ENST00000560628 RNF212BA8MTL3 300 aa8.83□□□□□ -1
LDLR-214ENST00000560628 NDUFS8O00217 210 aa8.83□□□□□ -1
LDLR-214ENST00000560628 RNF13O43567 381 aa8.83□□□□□ -1
LDLR-214ENST00000560628 LMX1BO60663 402 aa8.83□□□□□ -1
LDLR-214ENST00000560628 SHOX2O60902 331 aaPredicted RBP8.83□□□□□ -1
LDLR-214ENST00000560628 SASH3O75995 380 aa8.83□□□□□ -1
LDLR-214ENST00000560628 STAMBPO95630 424 aa8.83□□□□□ -1
LDLR-214ENST00000560628 IGFBP1P08833 259 aaPredicted RBP8.83□□□□□ -1
LDLR-214ENST00000560628 ADRA2AP08913 450 aa8.83□□□□□ -1
LDLR-214ENST00000560628 UMPSP11172 480 aa8.83□□□□□ -1
LDLR-214ENST00000560628 APEHP13798 732 aaKnown RBP8.83□□□□□ -1
LDLR-214ENST00000560628 DAOP14920 347 aa8.83□□□□□ -1
LDLR-214ENST00000560628 H2AFXP16104 143 aaPredicted RBP8.83□□□□□ -1
LDLR-214ENST00000560628 NR4A1P22736 598 aa8.83□□□□□ -1
LDLR-214ENST00000560628 GIPRP48546 466 aa8.83□□□□□ -1
LDLR-214ENST00000560628 PPOXP50336 477 aa8.83□□□□□ -1
LDLR-214ENST00000560628 CRYBA2P53672 197 aa8.83□□□□□ -1
LDLR-214ENST00000560628 RAB1AP62820 205 aa8.83□□□□□ -1
LDLR-214ENST00000560628 CYLC2Q14093 348 aaPredicted RBP8.83□□□□□ -1
LDLR-214ENST00000560628 MELKQ14680 651 aa8.83□□□□□ -1
LDLR-214ENST00000560628 RAB39AQ14964 217 aa8.83□□□□□ -1
LDLR-214ENST00000560628 MSMPQ1L6U9 139 aa8.83□□□□□ -1
LDLR-214ENST00000560628 VMACQ2NL98 169 aa8.83□□□□□ -1
LDLR-214ENST00000560628 TRMT5Q32P41 509 aaKnown RBP8.83□□□□□ -1
LDLR-214ENST00000560628 INTS11Q5TA45 600 aaKnown RBP8.83□□□□□ -1
LDLR-214ENST00000560628 METTL21CQ5VZV1 264 aa8.83□□□□□ -1
LDLR-214ENST00000560628 LRFN4Q6PJG9 635 aa8.83□□□□□ -1
LDLR-214ENST00000560628 SLC30A8Q8IWU4 369 aa8.83□□□□□ -1
LDLR-214ENST00000560628 SKA3Q8IX90 412 aa8.83□□□□□ -1
LDLR-214ENST00000560628 CDK20Q8IZL9 346 aa8.83□□□□□ -1
LDLR-214ENST00000560628 TMEM54Q969K7 222 aa8.83□□□□□ -1
LDLR-214ENST00000560628 ZNF75AQ96N20 296 aa8.83□□□□□ -1
LDLR-214ENST00000560628 FOXB1Q99853 325 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms