RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 TBC1D23Q9NUY8 699 aa8.2□□□□□ -1.1
LDLR-210ENST00000559340 USE1Q9NZ43 259 aa8.2□□□□□ -1.1
LDLR-210ENST00000559340 B3GAT1Q9P2W7 334 aa8.2□□□□□ -1.1
LDLR-210ENST00000559340 FOXD3Q9UJU5 478 aaPredicted RBP8.2□□□□□ -1.1
LDLR-210ENST00000559340 CLEC4AQ9UMR7 237 aa8.2□□□□□ -1.1
LDLR-210ENST00000559340 SLC35F4A4IF30 521 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 KDM4EB2RXH2 506 aaPredicted RBP8.19□□□□□ -1.1
LDLR-210ENST00000559340 M0R3G1 203 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 ARPC3O15145 178 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 TRAF3IP2O43734 574 aaPredicted RBP8.19□□□□□ -1.1
LDLR-210ENST00000559340 RAMP1O60894 148 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 SMNDC1O75940 238 aaKnown RBP eCLIP8.19□□□□□ -1.1
LDLR-210ENST00000559340 RENP00797 406 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 ACADSP16219 412 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 POU1F1P28069 291 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 SDHAP31040 664 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 ACVR1BP36896 505 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 GUCA1AP43080 201 aaPredicted RBP8.19□□□□□ -1.1
LDLR-210ENST00000559340 PCYT1AP49585 367 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 DAPP51397 102 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 CRISP1P54107 249 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 BIDP55957 195 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 CLRN1P58418 232 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 ERVK-25P63136 954 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 FOXF2Q12947 444 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 ITGADQ13349 1161 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 ACKR1Q16570 336 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 SLC27A4Q6P1M0 643 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 KLHL17Q6TDP4 642 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 PLXDC2Q6UX71 529 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 NUFIP2Q7Z417 695 aaKnown RBP8.19□□□□□ -1.1
LDLR-210ENST00000559340 BTLAQ7Z6A9 289 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 JAZF1Q86VZ6 243 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 CCDC71Q8IV32 467 aaPredicted RBP8.19□□□□□ -1.1
LDLR-210ENST00000559340 HS3ST5Q8IZT8 346 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 UBE2J2Q8N2K1 259 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 GPR137CQ8N3F9 429 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 RPRMLQ8N4K4 120 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 CBR4Q8N4T8 237 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 ARIH2OSQ8N7S6 290 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 ZIC4Q8N9L1 334 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 LRRC75AQ8NAA5 344 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 OR2T33Q8NG76 320 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 OR6N1Q8NGY5 312 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 MAGEE2Q8TD90 523 aaPredicted RBP8.19□□□□□ -1.1
LDLR-210ENST00000559340 ASB10Q8WXI3 467 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 ZNF566Q969W8 418 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 ZNF775Q96BV0 537 aaPredicted RBP8.19□□□□□ -1.1
LDLR-210ENST00000559340 STARD4Q96DR4 205 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 ZNF570Q96NI8 536 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 ERMAPQ96PL5 475 aaPredicted RBP8.19□□□□□ -1.1
LDLR-210ENST00000559340 SNX18Q96RF0 628 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 GPA33Q99795 319 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 NIPSNAP1Q9BPW8 284 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 USB1Q9BQ65 265 aaKnown RBP8.19□□□□□ -1.1
LDLR-210ENST00000559340 KATNB1Q9BVA0 655 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 HDHD5Q9BXW7 423 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 LINC00470Q9BZP3 86 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 C12orf49Q9H741 205 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 SMURF2Q9HAU4 748 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 NRIP3Q9NQ35 241 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 ASB6Q9NWX5 421 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 ELOVL5Q9NYP7 299 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 SEC14L4Q9UDX3 406 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 KLHL21Q9UJP4 597 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 ING1Q9UK53 422 aaPredicted RBP8.19□□□□□ -1.1
LDLR-210ENST00000559340 ZNF346Q9UL40 294 aaKnown RBP8.19□□□□□ -1.1
LDLR-210ENST00000559340 IER3IP1Q9Y5U9 82 aa8.19□□□□□ -1.1
LDLR-210ENST00000559340 CLEC18AA5D8T8 446 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 ZNF587BE7ETH6 402 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 PDLIM1O00151 329 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 EI24O14681 340 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 CASQ2O14958 399 aaPredicted RBP8.18□□□□□ -1.1
LDLR-210ENST00000559340 TNFSF13O75888 250 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 ZNF432O94892 652 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 CLDN14O95500 239 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 TXNDC12O95881 172 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 ALPLP05186 524 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 HLA-DOBP13765 273 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 KLK2P20151 261 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 BMP5P22003 454 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 GRK5P34947 590 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 PEX19P40855 299 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 GIPRP48546 466 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 CSNK1A1P48729 337 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 ASCL1P50553 236 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 ADORA2A-AS1P86434 159 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 PPP2R2BQ00005 443 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 MYBPC1Q00872 1141 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 TGFBR3Q03167 851 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 TOP3AQ13472 1001 aaPredicted RBP8.18□□□□□ -1.1
LDLR-210ENST00000559340 FHL1Q13642 323 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 P2RY6Q15077 328 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 STK11Q15831 433 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 SLC36A3Q495N2 470 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 THEM4Q5T1C6 240 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 C1QTNF12Q5T7M4 302 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 FBXW9Q5XUX1 488 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 VWA1Q6PCB0 445 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 CLEC18BQ6UXF7 455 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms