RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 CLDN17P56750 224 aa10.98□□□□□ -0.65
USP28-212ENST00000544750 UBA52P62987 128 aaKnown RBP10.98□□□□□ -0.65
USP28-212ENST00000544750 TXNL4AP83876 142 aaKnown RBP10.98□□□□□ -0.65
USP28-212ENST00000544750 HPCAP84074 193 aa10.98□□□□□ -0.65
USP28-212ENST00000544750 GUCY1A3Q02108 690 aa10.98□□□□□ -0.65
USP28-212ENST00000544750 EGR4Q05215 589 aa10.98□□□□□ -0.65
USP28-212ENST00000544750 AGKQ53H12 422 aa10.98□□□□□ -0.65
USP28-212ENST00000544750 PHYHD1Q5SRE7 291 aa10.98□□□□□ -0.65
USP28-212ENST00000544750 C6orf10Q5SRN2 563 aa10.98□□□□□ -0.65
USP28-212ENST00000544750 LRIF1Q5T3J3 769 aa10.98□□□□□ -0.65
USP28-212ENST00000544750 REP15Q6BDI9 236 aa10.98□□□□□ -0.65
USP28-212ENST00000544750 WBP2NLQ6ICG8 309 aa10.98□□□□□ -0.65
USP28-212ENST00000544750 ZNF440Q8IYI8 595 aa10.98□□□□□ -0.65
USP28-212ENST00000544750 MFSD8Q8NHS3 518 aa10.98□□□□□ -0.65
USP28-212ENST00000544750 STK35Q8TDR2 534 aa10.98□□□□□ -0.65
USP28-212ENST00000544750 SPDL1Q96EA4 605 aa10.98□□□□□ -0.65
USP28-212ENST00000544750 MS4A3Q96HJ5 214 aa10.98□□□□□ -0.65
USP28-212ENST00000544750 SYT3Q9BQG1 590 aa10.98□□□□□ -0.65
USP28-212ENST00000544750 SIKE1Q9BRV8 207 aa10.98□□□□□ -0.65
USP28-212ENST00000544750 TPT1P8Q9HAU6 139 aa10.98□□□□□ -0.65
USP28-212ENST00000544750 ZNF224Q9NZL3 707 aa10.98□□□□□ -0.65
USP28-212ENST00000544750 SLAMF8Q9P0V8 285 aa10.98□□□□□ -0.65
USP28-212ENST00000544750 CHST2Q9Y4C5 530 aa10.98□□□□□ -0.65
USP28-212ENST00000544750 A0A0G2JND7 137 aa10.97□□□□□ -0.65
USP28-212ENST00000544750 ZNF99A8MXY4 864 aaPredicted RBP10.97□□□□□ -0.65
USP28-212ENST00000544750 PPIHO43447 177 aaKnown RBP10.97□□□□□ -0.65
USP28-212ENST00000544750 PLPP2O43688 288 aa10.97□□□□□ -0.65
USP28-212ENST00000544750 SLC43A1O75387 559 aa10.97□□□□□ -0.65
USP28-212ENST00000544750 SEC14L2O76054 403 aa10.97□□□□□ -0.65
USP28-212ENST00000544750 KRT75O95678 551 aa10.97□□□□□ -0.65
USP28-212ENST00000544750 DBIP07108 87 aaKnown RBP10.97□□□□□ -0.65
USP28-212ENST00000544750 ADRA2CP18825 462 aa10.97□□□□□ -0.65
USP28-212ENST00000544750 FOXL1Q12952 345 aa10.97□□□□□ -0.65
USP28-212ENST00000544750 MAD2L1BPQ15013 274 aaPredicted RBP10.97□□□□□ -0.65
USP28-212ENST00000544750 HSP90B2PQ58FF3 399 aa10.97□□□□□ -0.65
USP28-212ENST00000544750 TREML4Q6UXN2 200 aa10.97□□□□□ -0.65
USP28-212ENST00000544750 ZNF836Q6ZNA1 936 aa10.97□□□□□ -0.65
USP28-212ENST00000544750 ZNF627Q7L945 461 aa10.97□□□□□ -0.65
USP28-212ENST00000544750 TMEM123Q8N131 208 aa10.97□□□□□ -0.65
USP28-212ENST00000544750 C10orf111Q8N326 155 aa10.97□□□□□ -0.65
USP28-212ENST00000544750 TMEM120AQ9BXJ8 343 aa10.97□□□□□ -0.65
USP28-212ENST00000544750 ZNF665Q9H7R5 613 aa10.97□□□□□ -0.65
USP28-212ENST00000544750 VAPAQ9P0L0 249 aa10.97□□□□□ -0.65
USP28-212ENST00000544750 SEC14L4Q9UDX3 406 aa10.97□□□□□ -0.65
USP28-212ENST00000544750 DSPPQ9NZW4 1301 aa10.97□□□□□ -0.65
USP28-212ENST00000544750 WNK1Q9H4A3 2382 aa10.97□□□□□ -0.65
USP28-212ENST00000544750 NOTCH1P46531 2555 aa10.97□□□□□ -0.65
USP28-212ENST00000544750 A0A0G2JK05 382 aa10.96□□□□□ -0.65
USP28-212ENST00000544750 ANP32DO95626 131 aa10.96□□□□□ -0.65
USP28-212ENST00000544750 HLA-HP01893 362 aa10.96□□□□□ -0.65
USP28-212ENST00000544750 NUDT7P0C024 238 aa10.96□□□□□ -0.65
USP28-212ENST00000544750 ARAFP10398 606 aa10.96□□□□□ -0.65
USP28-212ENST00000544750 BMP2P12643 396 aa10.96□□□□□ -0.65
USP28-212ENST00000544750 PRG2P13727 222 aa10.96□□□□□ -0.65
USP28-212ENST00000544750 ANPEPP15144 967 aa10.96□□□□□ -0.65
USP28-212ENST00000544750 ZNF43P17038 809 aa10.96□□□□□ -0.65
USP28-212ENST00000544750 NCF2P19878 526 aaPredicted RBP10.96□□□□□ -0.65
USP28-212ENST00000544750 GNA13Q14344 377 aa10.96□□□□□ -0.65
USP28-212ENST00000544750 ACSM5Q6NUN0 579 aa10.96□□□□□ -0.65
USP28-212ENST00000544750 RETREG3Q86VR2 466 aa10.96□□□□□ -0.65
USP28-212ENST00000544750 VRK2Q86Y07 508 aa10.96□□□□□ -0.65
USP28-212ENST00000544750 GPR137CQ8N3F9 429 aa10.96□□□□□ -0.65
USP28-212ENST00000544750 CADM2Q8N3J6 435 aa10.96□□□□□ -0.65
USP28-212ENST00000544750 LRRC17Q8N6Y2 441 aa10.96□□□□□ -0.65
USP28-212ENST00000544750 RNF217Q8TC41 542 aa10.96□□□□□ -0.65
USP28-212ENST00000544750 DVL3Q92997 716 aaPredicted RBP10.96□□□□□ -0.65
USP28-212ENST00000544750 OXGR1Q96P68 337 aa10.96□□□□□ -0.65
USP28-212ENST00000544750 OR2M2Q96R28 347 aa10.96□□□□□ -0.65
USP28-212ENST00000544750 ZNF416Q9BWM5 594 aa10.96□□□□□ -0.65
USP28-212ENST00000544750 IKZF5Q9H5V7 419 aa10.96□□□□□ -0.65
USP28-212ENST00000544750 OPN4Q9UHM6 478 aa10.96□□□□□ -0.65
USP28-212ENST00000544750 GMEB1Q9Y692 573 aa10.96□□□□□ -0.65
USP28-212ENST00000544750 A0A0G2JMP0 313 aa10.95□□□□□ -0.66
USP28-212ENST00000544750 A0A0X1KG70 313 aa10.95□□□□□ -0.66
USP28-212ENST00000544750 LOC102725191A0A1B0GVB3 256 aa10.95□□□□□ -0.66
USP28-212ENST00000544750 J3QLI3 93 aa10.95□□□□□ -0.66
USP28-212ENST00000544750 CLIC1O00299 241 aa10.95□□□□□ -0.66
USP28-212ENST00000544750 TRAF3IP2O43734 574 aaPredicted RBP10.95□□□□□ -0.66
USP28-212ENST00000544750 MPZL1O95297 269 aa10.95□□□□□ -0.66
USP28-212ENST00000544750 BCL10O95999 233 aa10.95□□□□□ -0.66
USP28-212ENST00000544750 BCHEP06276 602 aa10.95□□□□□ -0.66
USP28-212ENST00000544750 NR2F1P10589 423 aa10.95□□□□□ -0.66
USP28-212ENST00000544750 NAT2P11245 290 aa10.95□□□□□ -0.66
USP28-212ENST00000544750 MDH1P40925 334 aaKnown RBP10.95□□□□□ -0.66
USP28-212ENST00000544750 CRATP43155 626 aa10.95□□□□□ -0.66
USP28-212ENST00000544750 MAGEB1P43366 347 aa10.95□□□□□ -0.66
USP28-212ENST00000544750 CAPZA2P47755 286 aa10.95□□□□□ -0.66
USP28-212ENST00000544750 ANXA11P50995 505 aaKnown RBP10.95□□□□□ -0.66
USP28-212ENST00000544750 DSTNP60981 165 aa10.95□□□□□ -0.66
USP28-212ENST00000544750 SF3A3Q12874 501 aaKnown RBP eCLIP10.95□□□□□ -0.66
USP28-212ENST00000544750 RGNQ15493 299 aa10.95□□□□□ -0.66
USP28-212ENST00000544750 GSG1Q2KHT4 349 aa10.95□□□□□ -0.66
USP28-212ENST00000544750 RPS26P11Q5JNZ5 115 aaPredicted RBP10.95□□□□□ -0.66
USP28-212ENST00000544750 RNF220Q5VTB9 566 aa10.95□□□□□ -0.66
USP28-212ENST00000544750 DLEU7Q6UYE1 221 aa10.95□□□□□ -0.66
USP28-212ENST00000544750 NHLRC1Q6VVB1 395 aa10.95□□□□□ -0.66
USP28-212ENST00000544750 CLIP4Q8N3C7 705 aa10.95□□□□□ -0.66
USP28-212ENST00000544750 PIK3C3Q8NEB9 887 aa10.95□□□□□ -0.66
USP28-212ENST00000544750 OR4M2Q8NGB6 313 aa10.95□□□□□ -0.66
USP28-212ENST00000544750 NANPQ8TBE9 248 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms