RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 GUCA2AQ02747 115 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 FAPQ12884 760 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 SNTB2Q13425 540 aaKnown RBP15.31■□□□□ 0.04
USP28-208ENST00000540438 CCDC157Q569K6 752 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 OR10K2Q6IF99 312 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 OR8S1Q8NH09 359 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 SYNPRQ8TBG9 265 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 DEDD2Q8WXF8 326 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 DDOQ99489 341 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 APMAPQ9HDC9 416 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 PRDM6Q9NQX0 595 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 ICAM5Q9UMF0 924 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 ZNF879B4DU55 563 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 LMO7DNF2Z398 122 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 PIAS2O75928 621 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 YES1P07947 543 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 CCKBRP32239 447 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 SKP1P63208 163 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 EBPQ15125 230 aaKnown RBP15.31■□□□□ 0.04
USP28-208ENST00000540438 ARSKQ6UWY0 536 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 FAM122BQ7Z309 247 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 ZNF527Q8NB42 609 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 OR5AK2Q8NH90 309 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 ADIPOR1Q96A54 375 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 MARVELD1Q9BSK0 173 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 TCF7L1Q9HCS4 588 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 TRABD2BA6NFA1 517 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 MEN1O00255 615 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 ZNF593O00488 134 aaPredicted RBP15.3■□□□□ 0.04
USP28-208ENST00000540438 SSNA1O43805 119 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 LMX1BO60663 402 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 GATBO75879 557 aaKnown RBP15.3■□□□□ 0.04
USP28-208ENST00000540438 KDM4BO94953 1096 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 HTR2BP41595 481 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 PPICP45877 212 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 HSD11B2P80365 405 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 ACKR1Q16570 336 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 RPL22L1Q6P5R6 122 aaKnown RBP15.3■□□□□ 0.04
USP28-208ENST00000540438 FAM199XQ6PEV8 388 aaPredicted RBP15.3■□□□□ 0.04
USP28-208ENST00000540438 OR51D1Q8NGF3 324 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 OR2T4Q8NH00 348 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 SNAPC3Q92966 411 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 DVL3Q92997 716 aaPredicted RBP15.3■□□□□ 0.04
USP28-208ENST00000540438 NKD1Q969G9 470 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 SEC22CQ9BRL7 303 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 POLE3Q9NRF9 147 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 TAS2R5Q9NYW4 299 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 FBXL3Q9UKT7 428 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 ELF5Q9UKW6 265 aaPredicted RBP15.3■□□□□ 0.04
USP28-208ENST00000540438 OGG1O15527 345 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 ALOX12BO75342 701 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 PNPP00491 289 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 BDH1Q02338 343 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 OR11H4Q8NGC9 324 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 TSEN15Q8WW01 171 aaKnown RBP15.3■□□□□ 0.04
USP28-208ENST00000540438 SLC25A38Q96DW6 304 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 UBE2ZQ9H832 354 aaPredicted RBP15.3■□□□□ 0.04
USP28-208ENST00000540438 MOV10Q9HCE1 1003 aaKnown RBP15.3■□□□□ 0.04
USP28-208ENST00000540438 RALGAPA1Q6GYQ0 2036 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 LOC101059948A0A1B0GTJ6 334 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 OR6A2O95222 327 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 IL33O95760 270 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 CTLA4P16410 223 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 VEGFCP49767 419 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 TAS2R43P59537 309 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 IGLV3-21P80748 117 aaPredicted RBP15.3■□□□□ 0.04
USP28-208ENST00000540438 RSPO4Q2I0M5 234 aaPredicted RBP15.3■□□□□ 0.04
USP28-208ENST00000540438 PLA1AQ53H76 456 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 MAMSTRQ6ZN01 415 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 DUSP18Q8NEJ0 188 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 ZNF417Q8TAU3 575 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 GIMAP1Q8WWP7 306 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 AKAP1Q92667 903 aaKnown RBP eCLIP15.3■□□□□ 0.04
USP28-208ENST00000540438 KIAA1143Q96AT1 154 aaPredicted RBP15.3■□□□□ 0.04
USP28-208ENST00000540438 ZNF587Q96SQ5 575 aaPredicted RBP15.3■□□□□ 0.04
USP28-208ENST00000540438 ELOVL3Q9HB03 270 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 PRDM9Q9NQV7 894 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 GPR27Q9NS67 375 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 ZNF281Q9Y2X9 895 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 FKBP7Q9Y680 259 aa15.3■□□□□ 0.04
USP28-208ENST00000540438 TTC28Q96AY4 2481 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 G3V3Y1 287 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 SUSD5O60279 629 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 KHDRBS3O75525 346 aaKnown RBP15.29■□□□□ 0.04
USP28-208ENST00000540438 ARL6IP5O75915 188 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 SDHAP31040 664 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 ACTA2P62736 377 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 ACTG2P63267 376 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 HOXB13Q92826 284 aaPredicted RBP15.29■□□□□ 0.04
USP28-208ENST00000540438 PHF7Q9BWX1 381 aaPredicted RBP15.29■□□□□ 0.04
USP28-208ENST00000540438 SLC2A4RGQ9NR83 387 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 HAO2Q9NYQ3 351 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 OR5V1Q9UGF6 321 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 IFITM5A6NNB3 132 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 PPM1BO75688 479 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 UCHL1P09936 223 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 CDK2P24941 298 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 RBMS1P29558 406 aaKnown RBP15.29■□□□□ 0.04
USP28-208ENST00000540438 PRPS1P60891 318 aa15.29■□□□□ 0.04
USP28-208ENST00000540438 ST3GAL2Q16842 350 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms