RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 TRIP10Q15642 601 aa7.29□□□□□ -1.24
USP28-203ENST00000537490 AGKQ53H12 422 aa7.29□□□□□ -1.24
USP28-203ENST00000537490 BEND6Q5SZJ8 279 aaPredicted RBP7.29□□□□□ -1.24
USP28-203ENST00000537490 DLEU7Q6UYE1 221 aa7.29□□□□□ -1.24
USP28-203ENST00000537490 ZNF813Q6ZN06 617 aa7.29□□□□□ -1.24
USP28-203ENST00000537490 ZNF627Q7L945 461 aa7.29□□□□□ -1.24
USP28-203ENST00000537490 C10orf53Q8N6V4 93 aa7.29□□□□□ -1.24
USP28-203ENST00000537490 SCAIQ8N9R8 606 aa7.29□□□□□ -1.24
USP28-203ENST00000537490 SMYD1Q8NB12 490 aa7.29□□□□□ -1.24
USP28-203ENST00000537490 IL17RDQ8NFM7 739 aa7.29□□□□□ -1.24
USP28-203ENST00000537490 EPYCQ99645 322 aa7.29□□□□□ -1.24
USP28-203ENST00000537490 CCDC28BQ9BUN5 200 aa7.29□□□□□ -1.24
USP28-203ENST00000537490 ASPNQ9BXN1 380 aa7.29□□□□□ -1.24
USP28-203ENST00000537490 MRPL37Q9BZE1 423 aaKnown RBP7.29□□□□□ -1.24
USP28-203ENST00000537490 TPK1Q9H3S4 243 aa7.29□□□□□ -1.24
USP28-203ENST00000537490 DYNLRB1Q9NP97 96 aa7.29□□□□□ -1.24
USP28-203ENST00000537490 MRPL39Q9NYK5 338 aaKnown RBP7.29□□□□□ -1.24
USP28-203ENST00000537490 ZNF224Q9NZL3 707 aa7.29□□□□□ -1.24
USP28-203ENST00000537490 SELENONQ9NZV5 590 aa7.29□□□□□ -1.24
USP28-203ENST00000537490 FBXO9Q9UK97 447 aaPredicted RBP7.29□□□□□ -1.24
USP28-203ENST00000537490 POFUT2Q9Y2G5 429 aa7.29□□□□□ -1.24
USP28-203ENST00000537490 CMAHPQ9Y471 501 aa7.29□□□□□ -1.24
USP28-203ENST00000537490 CORINQ9Y5Q5 1042 aa7.29□□□□□ -1.24
USP28-203ENST00000537490 NOX1Q9Y5S8 564 aa7.29□□□□□ -1.24
USP28-203ENST00000537490 EVPLLA8MZ36 301 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 C11orf98E9PRG8 122 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 M0QX08 132 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 M0R3H8 397 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 SERPINB7O75635 380 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 SERPINI2O75830 405 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 LYPD3O95274 346 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 OPN1SWP03999 348 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 THY1P04216 161 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 ERCC1P07992 297 aaPredicted RBP7.28□□□□□ -1.24
USP28-203ENST00000537490 PATE4P0C8F1 98 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 IFNGR1P15260 489 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 B4GALT1P15291 398 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 TCN1P20061 433 aaPredicted RBP7.28□□□□□ -1.24
USP28-203ENST00000537490 HNF1AP20823 631 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 AHCYP23526 432 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 COL8A2P25067 703 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 APEX1P27695 318 aaKnown RBP7.28□□□□□ -1.24
USP28-203ENST00000537490 GLRXP35754 106 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 GIPRP48546 466 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 PTDSS1P48651 473 aaKnown RBP7.28□□□□□ -1.24
USP28-203ENST00000537490 CHN2P52757 468 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 SEC24CP53992 1094 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 NCALDP61601 193 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 RAB1AP62820 205 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 PUDPQ08623 228 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 SQLEQ14534 574 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 RAB39AQ14964 217 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 NPTX1Q15818 432 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 DUSP7Q16829 419 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 GSG1Q2KHT4 349 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 RUNDC3AQ59EK9 446 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 ELFN2Q5R3F8 820 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 AGBL2Q5U5Z8 902 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 LINC00114Q6XXX2 140 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 WDR88Q6ZMY6 472 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 PXKQ7Z7A4 578 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 LRP11Q86VZ4 500 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 CARM1Q86X55 608 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 PTOV1Q86YD1 416 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 ARMC8Q8IUR7 673 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 SKA3Q8IX90 412 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 LINC01356Q8N9X3 169 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 HIPK4Q8NE63 616 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 GPR32P1Q8NGA4 272 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 OR4D11Q8NGI4 311 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 OR6N1Q8NGY5 312 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 FGFBP3Q8TAT2 258 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 HPS1Q92902 700 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 MRPL24Q96A35 216 aaKnown RBP7.28□□□□□ -1.24
USP28-203ENST00000537490 C1orf159Q96HA4 380 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 SNX18Q96RF0 628 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 ZNF607Q96SK3 696 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 MCHR1Q99705 422 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 ARHGDIGQ99819 225 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 FOXB1Q99853 325 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 SYT3Q9BQG1 590 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 CPPED1Q9BRF8 314 aaPredicted RBP7.28□□□□□ -1.24
USP28-203ENST00000537490 TMEM43Q9BTV4 400 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 ULBP2Q9BZM5 246 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 B3GAT2Q9NPZ5 323 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 REV1Q9UBZ9 1251 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.28□□□□□ -1.24
USP28-203ENST00000537490 SLC13A4Q9UKG4 626 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 MXRA5Q9NR99 2828 aa7.28□□□□□ -1.24
USP28-203ENST00000537490 CUBNO60494 3623 aa7.27□□□□□ -1.25
USP28-203ENST00000537490 M0R233 179 aa7.27□□□□□ -1.25
USP28-203ENST00000537490 SYNGR3O43761 229 aa7.27□□□□□ -1.25
USP28-203ENST00000537490 ERLIN1O75477 346 aa7.27□□□□□ -1.25
USP28-203ENST00000537490 CH25HO95992 272 aa7.27□□□□□ -1.25
USP28-203ENST00000537490 HPXP02790 462 aa7.27□□□□□ -1.25
USP28-203ENST00000537490 ADORA3P0DMS8 318 aa7.27□□□□□ -1.25
USP28-203ENST00000537490 ALDH3B1P43353 468 aa7.27□□□□□ -1.25
USP28-203ENST00000537490 CSNK1A1P48729 337 aa7.27□□□□□ -1.25
USP28-203ENST00000537490 EVX1P49640 407 aa7.27□□□□□ -1.25
USP28-203ENST00000537490 ATP4BP51164 291 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms