RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 NOL3O60936 208 aaKnown RBP3.01□□□□□ -1.93
CD44-235ENST00000532339 PEX11AO75192 247 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 SCGB2A1O75556 95 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 SERPINA7P05543 415 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 UGT2B4P06133 528 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 DNAH10OSP0CZ25 163 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 GP9P14770 177 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 FCGR2BP31994 310 aaPredicted RBP3.01□□□□□ -1.93
CD44-235ENST00000532339 FCGR2CP31995 323 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 SRP14P37108 136 aaKnown RBP3.01□□□□□ -1.93
CD44-235ENST00000532339 CCT6AP40227 531 aaKnown RBP3.01□□□□□ -1.93
CD44-235ENST00000532339 MTTPP55157 894 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 TMEM50BP56557 158 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 KRTAP12-2P59991 146 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 TRA2BP62995 288 aaKnown RBP3.01□□□□□ -1.93
CD44-235ENST00000532339 UBE2IP63279 158 aaKnown RBP3.01□□□□□ -1.93
CD44-235ENST00000532339 DCDP81605 110 aaKnown RBP3.01□□□□□ -1.93
CD44-235ENST00000532339 GTF2BQ00403 316 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 CDKL1Q00532 357 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 NAAAQ02083 359 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 COX10Q12887 443 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 CALCOCO2Q13137 446 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 KIAA0141Q14154 515 aaPredicted RBP3.01□□□□□ -1.93
CD44-235ENST00000532339 RFTN1Q14699 578 aaPredicted RBP3.01□□□□□ -1.93
CD44-235ENST00000532339 ZKSCAN8Q15776 578 aaPredicted RBP3.01□□□□□ -1.93
CD44-235ENST00000532339 KNOP1Q1ED39 458 aaKnown RBP3.01□□□□□ -1.93
CD44-235ENST00000532339 RABGAP1LQ5R372 815 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 SLC25A30Q5SVS4 291 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 CASC10Q5T4H9 136 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 RIPPLY2Q5TAB7 128 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 STEAP1BQ6NZ63 245 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 ASRGL1Q7L266 308 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 UNC93AQ86WB7 457 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 CARM1Q86X55 608 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 BANPQ8N9N5 519 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 MLKLQ8NB16 471 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 NUP37Q8NFH4 326 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 ZNF418Q8TF45 676 aaPredicted RBP3.01□□□□□ -1.93
CD44-235ENST00000532339 CHPT1Q8WUD6 406 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 FCGR1BQ92637 280 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 NCLNQ969V3 563 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 DTNBP1Q96EV8 351 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 PSMB7Q99436 277 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 NDUFAF3Q9BU61 184 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 RSPO3Q9BXY4 272 aaPredicted RBP3.01□□□□□ -1.93
CD44-235ENST00000532339 DUSP16Q9BY84 665 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 SMYD3Q9H7B4 428 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 KCNK13Q9HB14 408 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 POPDC2Q9HBU9 364 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 ZNF160Q9HCG1 818 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 B3GAT2Q9NPZ5 323 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 CGNQ9P2M7 1197 aaKnown RBP3.01□□□□□ -1.93
CD44-235ENST00000532339 ATXN10Q9UBB4 475 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 BAIAP2L1Q9UHR4 511 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 ZNF490Q9ULM2 529 aaPredicted RBP3.01□□□□□ -1.93
CD44-235ENST00000532339 MGAT4BQ9UQ53 548 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 RNF115Q9Y4L5 304 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 FAM215AQ9Y5M1 114 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 HECTD4Q9Y4D8 3996 aa3.01□□□□□ -1.93
CD44-235ENST00000532339 LOC105371242A0A075B767 164 aa3□□□□□ -1.93
CD44-235ENST00000532339 IGHV4-30-2A0A087WSY4 118 aa3□□□□□ -1.93
CD44-235ENST00000532339 TRBV5-4A0A0C4DH59 114 aa3□□□□□ -1.93
CD44-235ENST00000532339 IQCMA0A1B0GVH7 501 aa3□□□□□ -1.93
CD44-235ENST00000532339 RNF222A6NCQ9 220 aa3□□□□□ -1.93
CD44-235ENST00000532339 GABRR3A8MPY1 467 aa3□□□□□ -1.93
CD44-235ENST00000532339 E7EQ34 232 aa3□□□□□ -1.93
CD44-235ENST00000532339 KLRC4-KLRK1H3BQV0 150 aa3□□□□□ -1.93
CD44-235ENST00000532339 LGALS8O00214 317 aa3□□□□□ -1.93
CD44-235ENST00000532339 TFECO14948 347 aaPredicted RBP3□□□□□ -1.93
CD44-235ENST00000532339 ZNF749O43361 778 aa3□□□□□ -1.93
CD44-235ENST00000532339 CDC40O60508 579 aaKnown RBP eCLIP3□□□□□ -1.93
CD44-235ENST00000532339 NDUFA7O95182 113 aa3□□□□□ -1.93
CD44-235ENST00000532339 LCA5LO95447 670 aa3□□□□□ -1.93
CD44-235ENST00000532339 POP4O95707 220 aaKnown RBP3□□□□□ -1.93
CD44-235ENST00000532339 IGHV3-13P01766 116 aa3□□□□□ -1.93
CD44-235ENST00000532339 PRB2P02812 416 aaPredicted RBP3□□□□□ -1.93
CD44-235ENST00000532339 XRCC1P18887 633 aaPredicted RBP3□□□□□ -1.93
CD44-235ENST00000532339 PTPN6P29350 595 aa3□□□□□ -1.93
CD44-235ENST00000532339 CYLC1P35663 651 aaPredicted RBP3□□□□□ -1.93
CD44-235ENST00000532339 ID1P41134 155 aa3□□□□□ -1.93
CD44-235ENST00000532339 TRPC1P48995 793 aa3□□□□□ -1.93
CD44-235ENST00000532339 ZNF131P52739 623 aa3□□□□□ -1.93
CD44-235ENST00000532339 PPP1CAP62136 330 aa3□□□□□ -1.93
CD44-235ENST00000532339 RPS27AP62979 156 aaKnown RBP3□□□□□ -1.93
CD44-235ENST00000532339 HSF2Q03933 536 aa3□□□□□ -1.93
CD44-235ENST00000532339 MESDQ14696 234 aa3□□□□□ -1.93
CD44-235ENST00000532339 HKDC1Q2TB90 917 aa3□□□□□ -1.93
CD44-235ENST00000532339 ZNF699Q32M78 642 aa3□□□□□ -1.93
CD44-235ENST00000532339 ADPRMQ3LIE5 342 aa3□□□□□ -1.93
CD44-235ENST00000532339 MOGAT2Q3SYC2 334 aa3□□□□□ -1.93
CD44-235ENST00000532339 ACSF3Q4G176 576 aaPredicted RBP3□□□□□ -1.93
CD44-235ENST00000532339 PYCR3Q53H96 274 aa3□□□□□ -1.93
CD44-235ENST00000532339 RHBDD2Q6NTF9 364 aa3□□□□□ -1.93
CD44-235ENST00000532339 AFTPHQ6ULP2 937 aa3□□□□□ -1.93
CD44-235ENST00000532339 LCLAT1Q6UWP7 414 aa3□□□□□ -1.93
CD44-235ENST00000532339 ABRAXAS1Q6UWZ7 409 aa3□□□□□ -1.93
CD44-235ENST00000532339 DPY19L2P2Q6ZN68 376 aa3□□□□□ -1.93
CD44-235ENST00000532339 Q6ZR54 194 aa3□□□□□ -1.93
CD44-235ENST00000532339 MISPQ8IVT2 679 aa3□□□□□ -1.93
CD44-235ENST00000532339 LINC00518Q8N0U6 118 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms