RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 OR6C65A6NJZ3 312 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 ZNF99A8MXY4 864 aaPredicted RBP9.25□□□□□ -0.93
CD44-227ENST00000528086 CXCR6O00574 342 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 ARHGEF9O43307 516 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 CCDC22O60826 627 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 TMCC2O75069 709 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 SERPINI2O75830 405 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 OR5F1O95221 314 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 MT-ND1P03886 318 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 ADORA3P0DMS8 318 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 NQO1P15559 274 aaKnown RBP9.25□□□□□ -0.93
CD44-227ENST00000528086 MAKP20794 623 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 GTF2E2P29084 291 aaKnown RBP9.25□□□□□ -0.93
CD44-227ENST00000528086 AQP2P41181 271 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 BIDP55957 195 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 NAAAQ02083 359 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 TGFBR3Q03167 851 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 RPL18Q07020 188 aaKnown RBP9.25□□□□□ -0.93
CD44-227ENST00000528086 MELKQ14680 651 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 MFSD13AQ14CX5 517 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 FXNQ16595 210 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 HIST3H3Q16695 136 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 SWI5Q1ZZU3 235 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 HMBOX1Q6NT76 420 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 TTC33Q6PID6 262 aaPredicted RBP9.25□□□□□ -0.93
CD44-227ENST00000528086 SLC22A25Q6T423 547 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 KLHL24Q6TFL4 600 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 CBLL1Q75N03 491 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 SLC35D2Q76EJ3 337 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 SSX8Q7RTT4 187 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 MDP1Q86V88 176 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 C10orf53Q8N6V4 93 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 FAM169BQ8N8A8 192 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 LRRC75AQ8NAA5 344 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 SLC26A7Q8TE54 656 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 LIPHQ8WWY8 451 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 PROX1Q92786 737 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 MS4A3Q96HJ5 214 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 SLC38A2Q96QD8 506 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 ASPNQ9BXN1 380 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 CACNG6Q9BXT2 260 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 SLC19A3Q9BZV2 496 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 FAM107BQ9H098 131 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 CXorf56Q9H5V9 222 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 OBP2BQ9NPH6 170 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 MRGBPQ9NV56 204 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 ARL8BQ9NVJ2 186 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 RHCGQ9UBD6 479 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 ZNF229Q9UJW7 825 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 BAG5Q9UL15 447 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 MGAT4BQ9UQ53 548 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 NOX1Q9Y5S8 564 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 CUBNO60494 3623 aa9.25□□□□□ -0.93
CD44-227ENST00000528086 TMEM129A0AVI4 362 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 GMNCA6NCL1 334 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 SMAD7O15105 426 aaKnown RBP9.24□□□□□ -0.93
CD44-227ENST00000528086 OR7A10O76100 309 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 LY6HO94772 140 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 IGF2P01344 180 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 HLA-HP01893 362 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 PATE4P0C8F1 98 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 PGA4P0DJD7 388 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 PGA3P0DJD8 388 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 CBR1P16152 277 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 AHCYP23526 432 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 RBM34P42696 430 aaKnown RBP9.24□□□□□ -0.93
CD44-227ENST00000528086 NUDT2P50583 147 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 SH3BGRP55822 239 aaPredicted RBP9.24□□□□□ -0.93
CD44-227ENST00000528086 PSME3P61289 254 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 LAPTM4AQ15012 233 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 C3orf36Q3SXR2 165 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 ARMC4Q5T2S8 1044 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 C1QTNF12Q5T7M4 302 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 TBPL2Q6SJ96 375 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 KLHL17Q6TDP4 642 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 BIVMQ86UB2 503 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 ZNF584Q8IVC4 421 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 MUC15Q8N387 334 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 GPR137CQ8N3F9 429 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 FAM156AQ8NDB6 213 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 PIK3C3Q8NEB9 887 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 OR6X1Q8NH79 312 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 TMEM239Q8WW34 195 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 RASSF5Q8WWW0 418 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 NANOS1Q8WY41 292 aaKnown RBP9.24□□□□□ -0.93
CD44-227ENST00000528086 TPD52L3Q96J77 140 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 RADILQ96JH8 1075 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 C7orf34Q96L11 122 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 HOPXQ9BPY8 73 aaPredicted RBP9.24□□□□□ -0.93
CD44-227ENST00000528086 EFCAB1Q9HAE3 211 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 NANSQ9NR45 359 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 CBLN4Q9NTU7 201 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 SELENONQ9NZV5 590 aa9.24□□□□□ -0.93
CD44-227ENST00000528086 MALRD1Q5VYJ5 2156 aa9.23□□□□□ -0.93
CD44-227ENST00000528086 A0A087WUU8 490 aa9.23□□□□□ -0.93
CD44-227ENST00000528086 IGHV2OR16-5A0A0B4J2B6 119 aa9.23□□□□□ -0.93
CD44-227ENST00000528086 CDC42EP2O14613 210 aa9.23□□□□□ -0.93
CD44-227ENST00000528086 KRT33AO76009 404 aa9.23□□□□□ -0.93
CD44-227ENST00000528086 WNT11O96014 354 aa9.23□□□□□ -0.93
CD44-227ENST00000528086 F13BP05160 661 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms