RNA–Protein interactions for RNA: ENST00000508871.5

NEDD4-209, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 5,707 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-209ENST00000508871 CDS1Q92903 461 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 CPNE4Q96A23 557 aaPredicted RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 FOXRED1Q96CU9 486 aaPredicted RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 SCGB3A2Q96PL1 93 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 TBX5Q99593 518 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 KLF6Q99612 283 aaPredicted RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 ACBD6Q9BR61 282 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 ZCCHC4Q9H5U6 513 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 IL26Q9NPH9 171 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 PRDM7Q9NQW5 492 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 SLCO1C1Q9NYB5 712 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 HSFX1Q9UBD0 423 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 NDRG3Q9UGV2 375 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 PSORS1C1Q9UIG5 152 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 ARL5AQ9Y689 179 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 TRIP11Q15643 1979 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 KIAA1324LA8MWY0 1029 aaPredicted RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 K7EQS6 105 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 CCSO14618 274 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 BET1O15155 118 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 PPIHO43447 177 aaKnown RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 TGOLN2O43493 480 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 RNASEH1O60930 286 aaKnown RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 FKBP6O75344 327 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 WISP1O95388 367 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 ZNF12P17014 697 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 F2RP25116 425 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 LIMS1P48059 325 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 PSMB2P49721 201 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 DLX5P56178 289 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 RHOBP62745 196 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 GK2Q14410 553 aaPredicted RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 ITIH4Q14624 930 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 PTGR1Q14914 329 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 CCL14Q16627 93 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 PDCD4Q53EL6 469 aaKnown RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 ACSBG2Q5FVE4 666 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 TFDP3Q5H9I0 405 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 GTF2H5Q6ZYL4 71 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 TMPRSS9Q7Z410 1059 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 HS3ST5Q8IZT8 346 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 CLDN19Q8N6F1 224 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 NUDT10Q8NFP7 164 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 ASB10Q8WXI3 467 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 RANBP9Q96S59 729 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 MESP1Q9BRJ9 268 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 SF3B5Q9BWJ5 86 aaKnown RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 POLDIP3Q9BY77 421 aaKnown RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 SDCBP2Q9H190 292 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 GALNT9Q9HCQ5 603 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 DCAF13Q9NV06 445 aaKnown RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 VAPAQ9P0L0 249 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 OPN4Q9UHM6 478 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 LSM7Q9UK45 103 aaKnown RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 VDAC3Q9Y277 283 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 GREB1Q4ZG55 1949 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 CLUHO75153 1309 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 M0QYV0 167 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 GPR137BO60478 399 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 STC2O76061 302 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 VNN2O95498 520 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 WDPCPO95876 746 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 ZNF35P13682 527 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 ZNF23P17027 643 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 CBLP22681 906 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 CTGFP29279 349 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 HCAR3P49019 387 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 TAS2R38P59533 333 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 DEFB115Q30KQ5 88 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 ACSM3Q53FZ2 586 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 NEPROQ6NW34 567 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 STRADAQ7RTN6 431 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 FAM24BQ8N5W8 94 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 NT5C3BQ969T7 300 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 ZNF479Q96JC4 524 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 ZNF670Q9BS34 389 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 CSNK1G1Q9HCP0 422 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 ASCL3Q9NQ33 180 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 STOX2Q9P2F5 926 aaPredicted RBP3.56□□□□□ -1.84
NEDD4-209ENST00000508871 ZNF175Q9Y473 711 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 X6R8D5 127 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 MYH10P35580 1976 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 EP400Q96L91 3159 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 SLC22A23A1A5C7 686 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 TM9SF1O15321 606 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 UGT2B17O75795 530 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 STSP08842 583 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 SELENOTP62341 195 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 ZNF33BQ06732 778 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 ZNF782Q6ZMW2 699 aaPredicted RBP3.56□□□□□ -1.84
NEDD4-209ENST00000508871 C12orf29Q8N999 325 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 OR9Q2Q8NGE9 314 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 OR8J2Q8NGG1 315 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 ABHD4Q8TB40 342 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 EDAQ92838 391 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 RTP4Q96DX8 246 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 SMIM12Q96EX1 92 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 HEXIM2Q96MH2 286 aaKnown RBP3.56□□□□□ -1.84
NEDD4-209ENST00000508871 CCDC32Q9BV29 185 aa3.56□□□□□ -1.84
NEDD4-209ENST00000508871 FAIM2Q9BWQ8 316 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms